Gene Information

Name : Smed_1846 (Smed_1846)
Accession : YP_001327516.1
Strain : Sinorhizobium medicae WSM419
Genome accession: NC_009636
Putative virulence/resistance : Unknown
Product : IstB ATP binding domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 1922170 - 1922970 bp
Length : 801 bp
Strand : -
Note : PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ret:RHE_PA00081 probable insertion sequence ATP-binding protein, IS21 family

DNA sequence : 
ATGACGAACGTGGATCATGACGTGCTGATCGCAACGCTCGATCGGCTGAAGCTGACGGCGATCCGCGACCAGCTCGACAC
GTTGCTGGACGAGGCGGCTCGTTCGAAGATGACCTTGCGCGAGGCGCTGGCTTTCCTTGTGTCGCGCGAGATTGCCCGGC
GCGACGAGCGGCGGATATCGATGTCGAGCAAGCTGGCGCAGTTCCCGTTCGTGCGCGAATTGGACGGCTTCGACTTCGAG
GCGCAGCCCTCGCTGGATCAGGGGCAGATCAGGGAGCTTGCGACCTGCCGCTGGATCGCTCACGGTGATACCGTACTCTT
CCTTGGACCGCCCGGTACAGGCAAGACGCATCTGGCTGTGGGCCTCGGCCGCGAGGCCATCCGCCAGAATTACAACGTCC
AGTTCGTCACGGCGGCCACGCTAGTGGCGATGCTGGCGAAGGCTCACAACGACGGCTCGCTCGACAAACAGTTGACGATC
CTGTCGCGGCCGAAATTGCTGATCATCGACGAGCTGGGTTACTTGCCCTTCGAGGCCAATGCCGCCCACCTGTTCTTCCA
ACTGGTGTCTCGGCGCTACGAGAAGGGCTCGATCCTGATCACCTCAAACCGTTCCGTGGGCGAATGGGGAAGTGTTTTTG
GCGACCCTGTCGTCGCCACGGCGATATTGGACCGCCTGCTTCACCACTCGACGGTGATCACCATCCGGGGCGACAGCTAT
CGGCTTCGCGAAAAGCGCCGCTCCGGCCTTCTGCAGAAAGCCGGAGCGGCGCTCCAACCCAACGAAACCGCAAACCAATG
A

Protein sequence : 
MTNVDHDVLIATLDRLKLTAIRDQLDTLLDEAARSKMTLREALAFLVSREIARRDERRISMSSKLAQFPFVRELDGFDFE
AQPSLDQGQIRELATCRWIAHGDTVLFLGPPGTGKTHLAVGLGREAIRQNYNVQFVTAATLVAMLAKAHNDGSLDKQLTI
LSRPKLLIIDELGYLPFEANAAHLFFQLVSRRYEKGSILITSNRSVGEWGSVFGDPVVATAILDRLLHHSTVITIRGDSY
RLREKRRSGLLQKAGAALQPNETANQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 1e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_1846 YP_001327516.1 IstB ATP binding domain-containing protein VFG1460 Protein 7e-38 42