|
Name : Smed_1768 (Smed_1768) Accession : YP_001327438.1 Strain : Sinorhizobium medicae WSM419 Genome accession: NC_009636 Putative virulence/resistance : Unknown Product : glycine betaine/L-proline ABC transporter ATPase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG4175 EC number : - Position : 1852183 - 1853229 bp Length : 1047 bp Strand : + Note : TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc04439 putative glycine betaine transport ATP-binding ABC transporter protein DNA sequence : ATGGCAAGTCACGCAATCGAGGTGAAAAACCTCTACAAGATTTTCGGCCCCCGCGGCGAGGATTACGTTAAACTCGTCGA GAAGGGGATGGGCAAGGCCGAACTCAACGAAAAACATGGTCACGTGCTCGGGCTGCAGGATATCAACATCTCCATGCCCG GCGGTTGCATAACGGTCGTGATGGGCCTGTCCGGTTCCGGCAAATCGACGCTGATCCGACACATAAACCGGCTGATCGAT CCGACCGCCGGAGAGGTCCTCTACGACGGCGTGGACGTCTGCAAGATGAACGAGAACGACCTTCGCTCGTTCCGCCGCCA CAAGACGGCCATGGTATTCCAGAAATTTGCGCTGCTGCCGCACCGCACCGTTCTCGAAAACACAATCTACGGCCTGGAAA TCCAGGGTATTGACCGGCGCGAAAGCGAAAAGCGTGCGCTTGGGTGGATCGATCGCGTCGGCCTTCAGGGTTTCGAGAAG CATTATCCGAACCAGCTTTCCGGCGGTATGCAGCAGCGCGTCGGCCTTGCCCGCGCGCTGACAAACGACGCCGACATCCT GCTGATGGACGAGGCCTATTCGGCACTCGATCCGCTGATCCGCGTCGATATGCAGTCCGTGCTGCTCGAATTGCAAAAGG AACTGAAGAAAACCGTGGTCTTCATCACCCACGATCTCGACGAGGCCCTGAGGCTCGGCGACAAGATCGCGATCCTGCGC GACGGGCACGTCGTGCAGCAGGGAACGGGTCAGGAGATCGTCCTGTCGCCGGCTGATGACTACATCACAGCCTTCGTACA AGAAGTGAATCGCGGGCGGGTTATCAATGTCGAGACAATCATGCGACCGCTCTCCGGCAATCCGGAAGGTCTGTCGCTCG CCGCAGGCACCGTGCTCGAAACCGCTGCACGCACGATGACCGGTGCCCACATCAGCAACGCGCATGTCGTTGACGCCAAC GGGCGACCGATCGGCGCGATCGACCTGCAGATGATCATTTCCGCCATGGTGACGCCGGTAAAGCATACTGATCTGCAGGC GGCTTGA Protein sequence : MASHAIEVKNLYKIFGPRGEDYVKLVEKGMGKAELNEKHGHVLGLQDINISMPGGCITVVMGLSGSGKSTLIRHINRLID PTAGEVLYDGVDVCKMNENDLRSFRRHKTAMVFQKFALLPHRTVLENTIYGLEIQGIDRRESEKRALGWIDRVGLQGFEK HYPNQLSGGMQQRVGLARALTNDADILLMDEAYSALDPLIRVDMQSVLLELQKELKKTVVFITHDLDEALRLGDKIAILR DGHVVQQGTGQEIVLSPADDYITAFVQEVNRGRVINVETIMRPLSGNPEGLSLAAGTVLETAARTMTGAHISNAHVVDAN GRPIGAIDLQMIISAMVTPVKHTDLQAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| opuAA | YP_281521.1 | glycine betaine transport ATP-binding protein | Not tested | Not named | Protein | 2e-76 | 52 |
| opuBA | YP_005124363.1 | choline transport system ATP-binding protein | Not tested | Not named | Protein | 2e-38 | 41 |
| opuBA | NP_938494.1 | choline transport system ATP-binding protein | Not tested | Not named | Protein | 1e-38 | 41 |
