Gene Information

Name : Smed_1223 (Smed_1223)
Accession : YP_001326908.1
Strain : Sinorhizobium medicae WSM419
Genome accession: NC_009636
Putative virulence/resistance : Virulence
Product : RNA-directed DNA polymerase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3344
EC number : -
Position : 1306022 - 1307281 bp
Length : 1260 bp
Strand : +
Note : PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sme:SMb21045 putative reverse transcriptasematurase protein

DNA sequence :
ATGACTTCGATAGATACGACAGACAAGCCGTTTCGAATTGAGAAGCGGCAAGTGTACGAAGCTTACAAAGCGGTCAAAGC
CAACCATGGCGCAGCCGGAGTGGACGGTGAGACCTTGGAGATGTTCGAGAAAGACCTTGCGAGAAATCTCTACAAGATCT
GGAATCGGATGTCGTCCGGGACCTACTTTCCGCCACCGGTGCGCGCCGTCTCCATTCCGAAGAAGACTGGTGGCGAAAGG
GTTTTGGGTGTGCCCACGGTCAGCGATCGGATCGCGCAGATGGTGGTCAAGCAGATGATTGAGCCGGATTTGGATTCCCT
CTTTCTTCCGGACTCCTACGGATACAGGCCGGGAAAATCGGCGTTGGATGCCGTTGGGGTGACGCGTCAGCGGTGCTGGA
AGTACGATTGGGTTCTGGAATTCGACATCAAAGGGCTGTTTGACAATCTTCCGCATGATCTCTTGCTGAAGGCGGTCAGA
AAGCACGTCAAATGCAACTGGGCTCTGCTCTACATCGAAAGATGGCTGGTCGCGCCCATGGAAAAGAACGGAGCAGTCAT
TGAGCGCACACGTGGTACCCCGCAAGGGGGCGTGGTCAGCCCAATCCTCTCGAATCTCTTCCTGCATTACGCGTTCGACG
TCTGGATGACTCGGACGCACCCTGATCTTCCATGGTGTCGGTATGCCGATGATGGTCTCGTGCACTGCCGGACCGAGCAA
GAAGCACAGGCCCTCAAGGCTGCGCTTCAAGCCCGGCTGGCAGAATGCGGACTTCAGATGCATCCGATCAAGACCCAGAT
CGTCTACTGCAAAGATAATCGGCGTCGGAAAAGGTATCCGACCGTCAAATTTGACTTCCTTGGATACCAATTCCGGCCGC
GACAGGTGGCGACGGCGCAGCAGGATGAGTTCTTCTGCGGCTACACCCCGGCGGCCAGCCCGACGGCGCTAAAGTCGATG
CGGGCCACGATCAAGAGCTTGAACATTCCGCGGCAAACGCCGGGGACGCTGGCTGAAATCGCCAAACAGATCAATCCGCT
CCTGCGGGGATGGATTGCCTATTATGGGCGGTTCAGTCGTTCGGCCCTGTTCTCTCTGGCTGACTACATCAATCGGAAGC
TCAAGGCCTGGATTATGCGAAAGTACAAGCGCTTTCGGTTCCACAAAACTCGGGCTTCGCAGTTCTTGCGGCAACTTGCT
CGAGATAATCGGGGCCTCTTCGTACACTGGCAGGCGTTCGGAACGAACCTGTTTGCCTGA

Protein sequence :
MTSIDTTDKPFRIEKRQVYEAYKAVKANHGAAGVDGETLEMFEKDLARNLYKIWNRMSSGTYFPPPVRAVSIPKKTGGER
VLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVR
KHVKCNWALLYIERWLVAPMEKNGAVIERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDGLVHCRTEQ
EAQALKAALQARLAECGLQMHPIKTQIVYCKDNRRRKRYPTVKFDFLGYQFRPRQVATAQQDEFFCGYTPAASPTALKSM
RATIKSLNIPRQTPGTLAEIAKQINPLLRGWIAYYGRFSRSALFSLADYINRKLKAWIMRKYKRFRFHKTRASQFLRQLA
RDNRGLFVHWQAFGTNLFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13526.1 reverse transcriptase Not tested PAGI-7 Protein 2e-113 55
unnamed CAD33771.1 putative reverse transcriptase Not tested PAI I 536 Protein 2e-81 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_1223 YP_001326908.1 RNA-directed DNA polymerase VFG1512 Protein 1e-81 47