Gene Information

Name : Smed_1221 (Smed_1221)
Accession : YP_001326906.1
Strain : Sinorhizobium medicae WSM419
Genome accession: NC_009636
Putative virulence/resistance : Unknown
Product : IS66 Orf2 family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 1304343 - 1304699 bp
Length : 357 bp
Strand : +
Note : PFAM: IS66 Orf2 family protein; KEGG: sme:SMc03279 putative transposase number 2 for insertion sequence ISRM28

DNA sequence : 
GTGATCGGAGTTTCGCCGAATGCCGTGAAGATCATGGTGGCGACGCAGCCTGTCGACTTCCGGCGCGGCATGAATGGCCT
GGTGGCTTTGGTGGCATCAGCGCTTGCGGCCGATCCCTATTGTGGCGACGTGTTCGTGTTCCGGGCCAAGCGTCTCGATC
GACTTCGCTGCATTTACTGGGACGGATCAGGCATGATCCTGGTGACGAAATGGCTGGAGGCGGGCAAGTTCGTTTGGCCA
CCGATCCGCGATGGCGCGATGCAGATGAGTAGCCAGGAGTTCTCGCTTTTGTTGGCCGGTATCGACTGGACGCGGGTCAA
ACGAAACGCGGTAAAGCGACCGACGAAAGCAGGCTGA

Protein sequence : 
MIGVSPNAVKIMVATQPVDFRRGMNGLVALVASALAADPYCGDVFVFRAKRLDRLRCIYWDGSGMILVTKWLEAGKFVWP
PIRDGAMQMSSQEFSLLLAGIDWTRVKRNAVKRPTKAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BCAM0247 YP_002232879.1 putative transposase Not tested BcenGI11 Protein 3e-17 45
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 2e-12 41
unnamed AAC31493.1 L0014 Not tested LEE Protein 1e-12 41
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 1e-12 41
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 9e-12 41
unnamed AAL99258.1 unknown Not tested LEE Protein 1e-12 41
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 9e-12 41
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 1e-12 41
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-12 41
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 2e-12 41
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 2e-12 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_1221 YP_001326906.1 IS66 Orf2 family protein VFG0792 Protein 6e-13 41
Smed_1221 YP_001326906.1 IS66 Orf2 family protein VFG1709 Protein 6e-13 41