Gene Information

Name : Amet_4685 (Amet_4685)
Accession : YP_001322412.1
Strain : Alkaliphilus metalliredigens QYMF
Genome accession: NC_009633
Putative virulence/resistance : Unknown
Product : IstB ATP binding domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 4812434 - 4813177 bp
Length : 744 bp
Strand : +
Note : PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein

DNA sequence :
ATGGAAAAATTAGAATCAATAAAGGATCACGCTAAAAAACTCAAATTGAACTACTTAAATACCAATGCAGATTCCATCGT
TGAAAATGCTGACATAAACAACATTTCATATCAGAATCTTTTACTGTCAATATTAGAAAACGAAGTCGATCTCAGAGAGA
AAAAGGCCCAGGAACGCAGAGTTAAGGCTGCAGGCTTTCCGGTACTTAAGACAATAGAAGAGTTCGATCTAACCTTTCAA
AGATCGATTACCCAAAGACAAATCAATAGTCTTATTGAGATGGACTGGATAGATAGAATGTATAATCTAATACTTTTAGG
CCCTCCAGGGGTAGGTAAAAGCCACTTGTGTATTGCATTAGGGTACAAGGCTGTAGAGATGGGCTACAAGGTTAGCTTCA
CCACCATGGACAATCTGATGCACTGTTTAAAAACACAGGAGATATCAAGAAAAAGCAAAGGGAAAATCAACAATGTTTTA
TCTTCTAGTCTTCTGATCATCGATGAGCTAGGTTACCTCCCCATATCAAGAGAAGAAGCGAACTTGTTTTTCCAATTAAT
ATCAGCCCTTCATGAACAAACATCGTTAATTATTACCTCCAACAAAGGGCTTGAAGATTGGACCGAGTTATTAGGGGACC
CCGCTTTAACCACGGCAGTGTTAGATAGAATCACTTACAGATGTGAGCTATTTAATATGACAGGTAAGAGCTATAGATTA
GAACATCGAGAATCATTGTTTTAA

Protein sequence :
MEKLESIKDHAKKLKLNYLNTNADSIVENADINNISYQNLLLSILENEVDLREKKAQERRVKAAGFPVLKTIEEFDLTFQ
RSITQRQINSLIEMDWIDRMYNLILLGPPGVGKSHLCIALGYKAVEMGYKVSFTTMDNLMHCLKTQEISRKSKGKINNVL
SSSLLIIDELGYLPISREEANLFFQLISALHEQTSLIITSNKGLEDWTELLGDPALTTAVLDRITYRCELFNMTGKSYRL
EHRESLF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 3e-34 46
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 3e-39 42
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 3e-39 42
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 3e-39 42
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 3e-39 42
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 4e-39 42
api84 CAF28558.1 putative transposase Not tested YAPI Protein 3e-39 42
unnamed CAA21402.1 - Not tested HPI Protein 4e-39 42
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 3e-39 42
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 3e-39 42
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 4e-39 42
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 4e-39 42
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 2e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amet_4685 YP_001322412.1 IstB ATP binding domain-containing protein VFG1460 Protein 2e-34 46
Amet_4685 YP_001322412.1 IstB ATP binding domain-containing protein VFG1515 Protein 2e-39 42
Amet_4685 YP_001322412.1 IstB ATP binding domain-containing protein VFG1627 Protein 2e-39 42
Amet_4685 YP_001322412.1 IstB ATP binding domain-containing protein VFG1606 Protein 2e-39 42
Amet_4685 YP_001322412.1 IstB ATP binding domain-containing protein VFG1663 Protein 1e-38 41