Gene Information

Name : Amet_4009 (Amet_4009)
Accession : YP_001321750.1
Strain : Alkaliphilus metalliredigens QYMF
Genome accession: NC_009633
Putative virulence/resistance : Unknown
Product : DNA-directed DNA polymerase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0749
EC number : -
Position : 4104091 - 4106040 bp
Length : 1950 bp
Strand : -
Note : PFAM: DNA-directed DNA polymerase; KEGG: bca:BCE_0377 DNA polymerase I

DNA sequence :
ATGGCTGAAATAAAAACATTACATTGTGATATTGAAACTTATAGTAGCGTCAATTTAGCAAAGTGTGGTGTGTATCGTTA
TGTTCAAGCAGATGATTTTGAAATTTTGTTGTTTGCCTATTCCACAGACGGAAGTGAGGTTAAAATAATCGATCTAGCCC
GCGGTGAAAAGATACCACCATTGATACTTTCTGCATTAGAAGATGATAAAGTTATAAAATATGCTCATAACGCTTCATTT
GAGCGGATATGCTTCTCACGCTTTCTAGGATACCCAGTGGGCAAGTATATTTCTCCTGAATCATGGAGGTGCACAATGAC
ATGGGCAGCATATATGGGGCTGCCGTTATCATTAGTAGGTGTGGGTGCAGTTCTTGGTCTTGGGAAGCAAAAAATGACGG
AAGGTAAAGATCTGATTCGTTTCTTTTGTGGTCCTTGTAGCCCGACTAAGACAAATGGAAACCGCACAAGAAATTTACCC
TCTGATGACCCAGAAAAATGGGAGAGATTCAAATCCTATAACATACGTGATGTCGAAGCAGAGATGGAGATTGAGCAGAA
ATTGATTAAATTTCCTGTGCCAGATTTCATCTGGGATGAATACCATTTGAGTGAGAGAATTAACGATAGCGGCATCAAGG
TAGACATGGACTTCGTAAAGCAAGCTATCGCTATGAATGAGATTTCACACACCAAGCTAATGGATCAGATGCAGGAAATA
ACAGAACTTGATAACCCCAACTCAGTACAGCAGATGAAAGATTGGCTTTCTGATAATGGCCTAGAAACAGATACCCTTGG
TAAAAAGGCTGTGGCAGAATTATTGAAGGACGCACCAGAGCACTTGGCTGAAGTGCTTAAACTACGTCAGCAACTGGCAA
AGTCATCCGTTAAGAAATACACGGCAATGGAAAATGCAGTCTGCAGTGATGGCAGGATTCGTGGCATGTTTACTTTTCTG
GGCGCCAATCGGACAGGACGCTTCAGCTCAAAAATAGTGCAGCTGCAGAACTTACCTCAAAACCATATGATGGATTTAAA
AGAGGCACGAAGCATCGTAAAAAATGGTGATTCTGAAGCACTTGAATTGCTATATGAAGATATACCAGATACTCTTTCAC
AACTTATCCGCACAGCCTTTGTACCAAAAGAAGGCAATAAGTTTATAGTTGCTGACTTTTCTGCTATTGAAGCTCGTGTG
CTGTCTTGGCTTGCGGGTGAACAGTGGCGAAATGAAGTTTTCGCAAATGGCGGTGATATATATTGTGCCTCGGCATCACA
GATGTTTAGAGTCCCTGTTGAAAAGCATGGTGTAAATGCTCATTTAAGGCAGAAAGGTAAAATTGCAGAATTGGCACTTG
GTTATGGTGGATCAGTGGGTGCTTTAAAGGCTATGGGAGCCTTAGAGATGGGACTTGAAGAAGAGGAGTTAAAACCCCTT
GTTAATGCTTGGAGAGCATCAAATCCAAACATCGTAAAGTTTTGGTGGGATGTGGATAGAGAAGTTAAGAAGTGCATTAA
GGAAAAAAAGTCTCAAGAAGTTCAAAATATCAAGTTTCATTACATGAGTGGAATGCTATTTATTGTTCTTCCTTCTGGCA
GAAAGCTTGCCTATGTAAAGCCTAATATTGGAGAAAATATCTTCGGTGGTGAATCAGTTACTTATGAGGGAGTTGGTGCT
ACAAAGAAATGGGAGAGGATTGAAAGTTATGGACCCAAGTTTGTAGAAAACATTGTTCAAGCCATCTCCCGTGATATTTT
AATGTATGCCATGAAGACACTTAGCACTTGTAGCATTGTGGCTCATGTACACGATGAAGTAATTATTGAGGCTGACCAAA
GCCTGTCACTTGATATGGTATGCAAGCAGATGGGCAGAGTACCTCCCTGGGCAAAGGGATTGCTCCTTGATGCCGATGGC
TACGAATGCGATTTTTATAAGAAAGATTAA

Protein sequence :
MAEIKTLHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLILSALEDDKVIKYAHNASF
ERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGVGAVLGLGKQKMTEGKDLIRFFCGPCSPTKTNGNRTRNLP
SDDPEKWERFKSYNIRDVEAEMEIEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQEI
TELDNPNSVQQMKDWLSDNGLETDTLGKKAVAELLKDAPEHLAEVLKLRQQLAKSSVKKYTAMENAVCSDGRIRGMFTFL
GANRTGRFSSKIVQLQNLPQNHMMDLKEARSIVKNGDSEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARV
LSWLAGEQWRNEVFANGGDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKAMGALEMGLEEEELKPL
VNAWRASNPNIVKFWWDVDREVKKCIKEKKSQEVQNIKFHYMSGMLFIVLPSGRKLAYVKPNIGENIFGGESVTYEGVGA
TKKWERIESYGPKFVENIVQAISRDILMYAMKTLSTCSIVAHVHDEVIIEADQSLSLDMVCKQMGRVPPWAKGLLLDADG
YECDFYKKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SEQ_2073 YP_002747288.1 phage DNA polymerase Not tested ¥ÕSeq4 Protein 2e-135 50
polA YP_494120.1 phage related DNA polymerase family A Not tested ¥ÕSa2 Protein 2e-129 48
MW1425 NP_646242.1 DNA polymerase Not tested ¥ÕSa2 Protein 2e-129 47