|
Name : Amet_4005 (Amet_4005) Accession : YP_001321746.1 Strain : Alkaliphilus metalliredigens QYMF Genome accession: NC_009633 Putative virulence/resistance : Unknown Product : resolvase domain-containing protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1961 EC number : - Position : 4100212 - 4101774 bp Length : 1563 bp Strand : - Note : PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: bca:BCE_0419 DNA recombinase, putative DNA sequence : ATGGCAGGAAAAAATATAACTGTAATTCCGGCACGAAAAAGAGTTGGAAGTACAGCCGCAAAAGAAAAAATAAAGAAACT GCGTGTCGCTGCCTATTGCCGTGTTTCTACAGAAACTGAAGAGCAGAATTTAAGTTATGAAGTACAGGTTGCACATTATA CGGAATATATAAAGAAAAATACGGAATGGGAGTTTGCAGGCATATTTGCAGATGACGGCATTTCCGGTACTAACACTAAA AAACGAGAAGAATTCAACCGCATGATTGAGGAGTGTATGGAGGGCAACATCGATCTAGTTATTACAAAGTCCATCAGTCG ATTTGCCCGCAACACGCTGGATTGCTTAAAGTATATTAGACAGCTCAAGGAAAAGAACATAGCAGTGTATTTTGAAAAAG AGAACATCAACACAATGGATGCCAAGGGCGAGGTGCTACTTACCATTATGGCCTCTCTTGCACAACAAGAAAGCCAGAGC CTTTCGCAGAACGTTAAACTCGGACTTCAATATCGCTACCAGCAAGGAAAGGTGCAGGTCAATCACAATCGATTTATGGG ATACACAAAAGATGAAGAAGGCAACTTGATTATTGTTCCAGAAGAGGCTGAAATCATTAAACGTATTTACAGAGAGTACC TTGAGGGCAAAAGCCTAGTAGGCATTGGCAGGGATCTAGAGAAAGACGGTATATTAACAGCTGCAGGTAAACCAAGATGG AGACCAGAAACCATAAAGAAGATTCTTCTGAACGAGAAATACATCGGCGATGCCCTTTTGCAGAAAACTTTCACAGTGGA TTTTCTTACAAAGAAACGAGTCAAGAATGAAGGTCATGTCCCACAGTATTATGTCGAAAATAGCCATGAGGCTATCATTC CGAAAGAGCTTTTTTTACAGGCTCAGGAAGAGCTACATCGCAGAAGTAATATTTACACAGGTGCAGACAAAAATAAAAGA ATTTATAGCAGTAAATACGCTTTGAGTACCATAACCTTCTGCGGAGATTGTGGTGACATTTACAGACGTGTCTATTGGAA TATTCACGGTAGAAAAGAATTTGTTTGGCGATGCGTTACAAGAATCGAGCAAGGCCCTGAGGTATGTAAAAACCGAACGG TAAAAGAAACTGAATTATATGATGCAGTAATGACTGCCATTAACAGATTGCTTGCCGGTGGGGACAACATGATAAGAATA CTGGAAGAAAACATCTATGCGGTAATCGGTGATACCACGGAATATAAGATTTCAGAGATTAACACCTTGCTTGAAGAAAA GCAGAAGGAAGTAATAAACCTTGCTAACAAGGGGAAAGATTACGATTTTCTCGCAGATGAGATTGACAAGCTACGTGAAA AGCGTCAGACCCTTCTTGTGGAAGATGCATCCTTAAGTGGTGAGAATGAGCGAATCAACGAACTGATAGACTTTATCCGC AACAACAAATATCGGACCTTACTATATGATGATACCCTTGTAAGGAAGATCATACAAAATGTTACGGTGTATGATGACCA CTTTGTAATATGCTTTAAATCAGGCATTGAAATTGAAGTATGA Protein sequence : MAGKNITVIPARKRVGSTAAKEKIKKLRVAAYCRVSTETEEQNLSYEVQVAHYTEYIKKNTEWEFAGIFADDGISGTNTK KREEFNRMIEECMEGNIDLVITKSISRFARNTLDCLKYIRQLKEKNIAVYFEKENINTMDAKGEVLLTIMASLAQQESQS LSQNVKLGLQYRYQQGKVQVNHNRFMGYTKDEEGNLIIVPEEAEIIKRIYREYLEGKSLVGIGRDLEKDGILTAAGKPRW RPETIKKILLNEKYIGDALLQKTFTVDFLTKKRVKNEGHVPQYYVENSHEAIIPKELFLQAQEELHRRSNIYTGADKNKR IYSSKYALSTITFCGDCGDIYRRVYWNIHGRKEFVWRCVTRIEQGPEVCKNRTVKETELYDAVMTAINRLLAGGDNMIRI LEENIYAVIGDTTEYKISEINTLLEEKQKEVINLANKGKDYDFLADEIDKLREKRQTLLVEDASLSGENERINELIDFIR NNKYRTLLYDDTLVRKIIQNVTVYDDHFVICFKSGIEIEV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSU05_0953 | YP_001198319.1 | DNA recombinase | Not tested | 89K | Protein | 0.0 | 90 |
| SSU98_0960 | YP_001200518.1 | DNA recombinase | Not tested | 89K | Protein | 0.0 | 90 |
| smi_1713 | YP_003446815.1 | site-specific recombinase | Not tested | The aminoglycoside resistance gene cluster | Protein | 5e-159 | 65 |
