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Name : Amet_3125 (Amet_3125) Accession : YP_001320923.1 Strain : Alkaliphilus metalliredigens QYMF Genome accession: NC_009633 Putative virulence/resistance : Unknown Product : DNA polymerase I Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0749 EC number : 2.7.7.7 Position : 3168468 - 3171161 bp Length : 2694 bp Strand : - Note : has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair DNA sequence : ATGAACTTAAAACGTATGGTGATTATCGATGGGAACAGTCTCATTAACCGCGCTTTTTATGCACTACCACCTTTGACCAA TAAAGAAGGCCAACATACCAATGCCATTTATGGCTTCATGACAATGCTGCTGAAGGTAATGGACGACTACGATCCACAGT ATATTAGTGTGGCTTTTGACCGTAAAGCACCCACCTTTAGACATAAGAGCTTCGAAGGGTACAAGGCAGGCCGAAAAAAA ATGCCTCCGGAATTAGCAGAGCAGCTAGAACCTCTAAAGGAAGTACTAGATGCATTTCATATTTACCGCGTTGAGATTGA TGGATTTGAAGCCGACGACTTAATTGGTACCCTATCGAAATATGCCGAGGAACAAGACATTGAGTGTTTAATTGTAACGG GTGATAAGGATGCGCTGCAGCTGGCTTCAGAAAAGGTGAAAATCCTTTTTACAAAAAAAGGGATTTCTAGCCTGGAGATA TATGATCCCCAAAAGATTATGGAGCAATATGAAGTGACTCCTGAACAATTTATTGATCTAAAGGGACTGATGGGGGATAA TTCTGATAACATTCCTGGAATTCCTGGTGTGGGGGAGAAAACGGCCATTAAATTGCTGAAGCAGTTTGGCACCGTAGAGA ATTTAATTCAAAATGCGGGAGAAATTTCAGCGCAAAAACTTCGGGAGAAGGTAGAGAATAACACAGAGCAAGCCATGATG AGTAAACGCTTAGCAACGATTATGACCAATGTACCTGTGGAAATTGAGCTAGAAAAACTAAAAAAGATCGCAATTGATGA AGAAAAGGTATTAGCTCTCTTTAAAAAATTCGAGTTTAATACTTTGATTGGCAGAGTCATCGCTCGCAAAGAAGAGGTTG ACGGTGAAGTAGTTGTTAAACAAGAAAAAATGACCAATGAGATTGCCCAAATTACCAATATAGATGAGCTTAAAAAGGCC TTCGATGAAGTAAGAGCTGGCAAGCAGATGATACTCCAAACAAAAACAGAAGAAGAAAACATTGTACTAGATCATATCCT AGCCATTACCTTTAGTGTTAATGGTGAAAAACTATATTACATAGATGTACGGGACTTTTCAGATAAAGAGGCTCTATTGA TACAAATTAAAGAGGTATTAGAGGATGAGGAGATCCATAAAATTGGACACGACATTAAGCATGAAATTCGTCACTTTTAT GTGCATGACATCGAAATGAAAAATGTCACATTTGATACCATGATAGGAGAATACTTGATTGATCCTGCTAAATCTAGCTA TGCCCTAAAGGATTTAGCAGCCCAGTATATCGGGCAAGAGGTGATGTCAGAGGAAGAACTTAGAGGAAAGGGTAAAAATC TAATATCCATTGGAGAAGCCCCTAAGGAAGACTTAATGAAATATCTGTGCCAGAGAGTCAGCGTTATTGGTAAAATCTAT CCTGAAATTAAAGCCAAGATGCAAGAACTTGAATTAGAGAAACTGTACTACGAAGTGGAATTACCCTTGGTAGAGGTGTT AGCTGCCATGGAATATAAGGGAATCAAAGTGGACCGAAGTATGTTAGAAATATTAGAAATAGAGTTTGGTGAACAAATCG ATTTATTGACGAAGGCAATCCATGAACTGGCAGAAACGAATTTTAATATTAATTCTCCTAAGCAATTAGGCGAAGTGCTA TTTGAAAAGTTGGAACTACCCCCAATAAAAAAGACAAAAACCGGTTATTCTACTAATGCAGAAGTGTTGGAAAAGTTACA AGATCAACATGATATTATTCCTAAGATTTTAGAATATCGTCAAGTCACAAAACTAAAGAGTACCTATGTCGATGGATTAC TAAATATTATTAATCCTGAGACAGGGCGTATTCATTCCAACTTCAATCAAACGGTTACAACAACAGGGCGAATCTCTAGT ACAGAGCCTAATTTACAAAATATTCCTATCAAGCTAGAAATGGGTAGAAGACTCAGAAAGGTGTTTGTGGCTAATGAAAA TCATCAGTTTATTGATGCAGACTACTCACAGGTTGAATTGAGAGTCTTAGCCCATATTTGTGAAGATGAGAATCTACTGG ATGCCTTTCTTAAAAATCAGGATATCCATACAAGAACTGCAGCTGAAATTTTTGATGTACCCATGGAGGAAGTTACTGAC TCCATGAGGAGCAGTGCCAAGGCCGTTAATTTTGGGATTGTCTATGGTATCAGTGATTATGGACTATCTCAAAATCTAAA TATTACCAGAGTGAAAGCTAAAAAGTATATTGACAACTATTTGGATAAATATCCTTCGGTGAAAAGGTATATGGACGAGA TTGTAGAGCAGGCTCACCAGCAGGGCTATGTTGTTACATTATTTAATAGAAGAAGATATCTTCCAGAGTTGAAATCCAGA AATTTCAACATTAGATCCTTTGGTGAGCGAATGGCCATGAATACACCGATTCAAGGAAGTGCGGCTGATATTATTAAAAT TGCCATGGTCAATGTGTATCGTAGGCTAAAGGAGCAGGGATTAACATCAAAATTAATTTTACAGGTACATGATGAATTAA TTGTAGAGGCGCCAGACAATGAAGTAGAGGTAGCCATTAAAATAGTAAGAGAATCTATGGAAGAAGCAATGAATCTAAAG GTACAGCTGAAAGTAGATTTAGCCTATGCCAATAATTGGTATGATGCGAAGTAA Protein sequence : MNLKRMVIIDGNSLINRAFYALPPLTNKEGQHTNAIYGFMTMLLKVMDDYDPQYISVAFDRKAPTFRHKSFEGYKAGRKK MPPELAEQLEPLKEVLDAFHIYRVEIDGFEADDLIGTLSKYAEEQDIECLIVTGDKDALQLASEKVKILFTKKGISSLEI YDPQKIMEQYEVTPEQFIDLKGLMGDNSDNIPGIPGVGEKTAIKLLKQFGTVENLIQNAGEISAQKLREKVENNTEQAMM SKRLATIMTNVPVEIELEKLKKIAIDEEKVLALFKKFEFNTLIGRVIARKEEVDGEVVVKQEKMTNEIAQITNIDELKKA FDEVRAGKQMILQTKTEEENIVLDHILAITFSVNGEKLYYIDVRDFSDKEALLIQIKEVLEDEEIHKIGHDIKHEIRHFY VHDIEMKNVTFDTMIGEYLIDPAKSSYALKDLAAQYIGQEVMSEEELRGKGKNLISIGEAPKEDLMKYLCQRVSVIGKIY PEIKAKMQELELEKLYYEVELPLVEVLAAMEYKGIKVDRSMLEILEIEFGEQIDLLTKAIHELAETNFNINSPKQLGEVL FEKLELPPIKKTKTGYSTNAEVLEKLQDQHDIIPKILEYRQVTKLKSTYVDGLLNIINPETGRIHSNFNQTVTTTGRISS TEPNLQNIPIKLEMGRRLRKVFVANENHQFIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVTD SMRSSAKAVNFGIVYGISDYGLSQNLNITRVKAKKYIDNYLDKYPSVKRYMDEIVEQAHQQGYVVTLFNRRRYLPELKSR NFNIRSFGERMAMNTPIQGSAADIIKIAMVNVYRRLKEQGLTSKLILQVHDELIVEAPDNEVEVAIKIVRESMEEAMNLK VQLKVDLAYANNWYDAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| polA | YP_281523.1 | DNA polymerase I | Not tested | Not named | Protein | 2e-148 | 41 |
