Gene Information

Name : Amet_3079 (Amet_3079)
Accession : YP_001320878.1
Strain : Alkaliphilus metalliredigens QYMF
Genome accession: NC_009633
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3117295 - 3117969 bp
Length : 675 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC3560 ABC-type transporter, ATPase component

DNA sequence : 
ATGCAAACAATGATTCAATCAGTCGAATTATATAAAAGTTTTATCTTAGGAACCATTTCAGTTGAGGTTTTAAAAGACAT
TAATCTGTCTATAACTAAAGGTGAATTCATTACAATCATGGGTCCTTCAGGCTCTGGTAAAAGCACATTATTGTATCTCA
TGGGAGGCTTGGATAAGCCTACCACAGGAAAAATCATCATCAATGGTCAGGATATTTCCACCTTATCCGATCAAAAACAA
AGTGTTATGAGGCGTAGAGAAGTGGGATTTGTTTTTCAGTTTTACAATCTAGTTCCCAATCTAACAGTAGAAGAAAATAT
CATGCTCCCCATTTTGTTAGATGGTAAAAAGACCAAGAACTATCGGGAAAAGCTAGATGAAATTCTTGATATTGTAGAAT
TATCTGACCGAAAAACCCATACCCCTCGGGAGCTATCAGGTGGACAACAGCAGCGTGTGGCCATCGCCCGGGCACTGATC
AATGAACCCGATATCATTTTAGCTGATGAGCCCACGGGAAATCTAGATAGCAAAACCACTGAGGAAGTAATGAAATTATT
ACAGCGGATCAACGAAGAAAAAGGAAAGACCATTGTACAGGTGAGTCACTCCTTAGAAACTGCAAAATATAGTAATCGAA
TTATCAATGTAAAAGATGGGAAGGTGTGGGAGTAG

Protein sequence : 
MQTMIQSVELYKSFILGTISVEVLKDINLSITKGEFITIMGPSGSGKSTLLYLMGGLDKPTTGKIIINGQDISTLSDQKQ
SVMRRREVGFVFQFYNLVPNLTVEENIMLPILLDGKKTKNYREKLDEILDIVELSDRKTHTPRELSGGQQQRVAIARALI
NEPDIILADEPTGNLDSKTTEEVMKLLQRINEEKGKTIVQVSHSLETAKYSNRIINVKDGKVWE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-41 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-41 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-41 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-41 43
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 2e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amet_3079 YP_001320878.1 ABC transporter-like protein CP001581.1.gene798.p Protein 3e-49 50
Amet_3079 YP_001320878.1 ABC transporter-like protein CP001581.1.gene598.p Protein 2e-46 48
Amet_3079 YP_001320878.1 ABC transporter-like protein NC_012469.1.7686878. Protein 6e-47 47
Amet_3079 YP_001320878.1 ABC transporter-like protein NC_008702.1.4606598. Protein 4e-40 46
Amet_3079 YP_001320878.1 ABC transporter-like protein NC_012469.1.7685735. Protein 5e-39 43