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Name : Amet_0277 (Amet_0277) Accession : YP_001318169.1 Strain : Alkaliphilus metalliredigens QYMF Genome accession: NC_009633 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 313292 - 315139 bp Length : 1848 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-ter DNA sequence : ATGAAGAAAAGGGTGTTGAGTGGGCTATTGATGATGATGGATGCTGCCATGATAAACATTGCAGTGGTCATTGCCTTTTA CATACGATTTGATGGGGCTTTTTCAGGTAGATTCGCAGGGCAGTATATTCCTATTTATACGGACAACTTATTAACTTTCA CTTTGATTAAAATCGCACTTTTTTATGCCTTTGGTATGTATCAAAACCTATGGAAATATGCCAGCATAGAGGCAGTCTTT CAAATTATGATCGCAGCCTTCGTTGCCAACACAGGTGTGGTTAGCTATATGGTCCTCACCCAACAGGGGCATCTACCTAG GAGTATTTACCTGTTGATGTTTATTTTGGACATGTTACTGGTAGGGGGCATACGCTTTAGCTATCGTGCCACTCGGGGAC TACGGGAGCATGGTTTCATTAGAAGGAAAAACTGTAAACGGGTGATGATTGTAGGAGCCGGGACTGCCGGGGCTGTGGTC ATCAAAGAGCTTAAAATCCATGATAACTTAAATTACAAACCAGTGGCAGTCATCGATGATGATGAGTCAAAGTTAGGCTC TAAAATCAATGGGGTTCCTGTCCTGGGGGATCGATATCATATTAAAAAGGTAGCTGAAATGAAACAAGTAGATGAAATCA TTATTGCCATACCCTCTGGGTTTAGACAAGAACTCAAGGAAATCGTGGAGGAATGTAGTAAAACCAAGTGTAAACTAAAA ATATTACCTGGCATTGGTGAGTTGATCGATGGCAAGGTCAGTATGAAAAAGGCCCGTGATGTGGAGATTGAAGATCTATT AGGTAGGGATGCCATTAATATAGATCTTGAGGAGATCAGTGAGTATCTACATAATCAAGTGGTCTTAATTACTGGAGGTG GAGGATCTATTGGGTCTGAGCTTTGCAGACAGATTGCCACATTCAATCCCAAGAAGCTCTTAATATTAGATAACTATGAA AATAATGCTTATGATATACAAAATGAATTGAGAAGAAAATATCCTGAGTTGAATTTAGAAGTGTTGATTGCTTCAGTAAG AGAAAGGGACCGTATAGAGGAAATTTTTGGTCAATATTTACCTGAGGTCATATTTCATGCGGCGGCCCATAAGCATGTTC CTTTGATGGAGGCCAATCCTCAGGAAGCCATTAAAAATAATATTTTTGGAACCAAAAATGTAGCAGAATGTGCTGATCAA TTTGGTGCCAAGAGATTTGTTCTAATTTCCACAGATAAAGCGGTGAATCCCACTAATATTATGGGTGCCACCAAGCGAGT AGCAGAAATGTTGATCCAGTCTATTGATTTAACAAGTAAAACTGAGTTCGTGGCGGTACGGTTTGGAAATGTATTAGGGA GCAATGGTAGTGTGATTCCCCTCTTTAAAAGGCAAATTGCAGAAGGGGGACCGGTGACGGTGACACATCCAGAGGTTACT CGATACTTTATGACCATCCCTGAGGCAGTTCAGCTGGTGATCCAAGCTGGTTCAATGGCAAGTGGCGGGGAAATATTTGT CTTGGATATGGGAGAGCCAGTGAAGATTATTGATTTAGCCAGAAACCTTATTCGCCTTTCTGGGATGGAGCCTGATGTGG ATATGGACATTAAGGTGGTTGGGTTAAGGCCAGGAGAAAAGCTCTATGAAGAGCTATTGATGGATGAAGAAGGATTAGAG TCAACCAAGCATGATAAGATTTTTGTGGGAAAACCATTCTTTACTGATTTAAAGTTTTTAGAAAGAGAGTTGGACATTTT ATCGGATCTCTTATTATTAAGAGACCAAGAGGAAGTCAAAGAATATATGGTGAAGATTGTTCCTACATATCATAGAGAGA CAAGCTGA Protein sequence : MKKRVLSGLLMMMDAAMINIAVVIAFYIRFDGAFSGRFAGQYIPIYTDNLLTFTLIKIALFYAFGMYQNLWKYASIEAVF QIMIAAFVANTGVVSYMVLTQQGHLPRSIYLLMFILDMLLVGGIRFSYRATRGLREHGFIRRKNCKRVMIVGAGTAGAVV IKELKIHDNLNYKPVAVIDDDESKLGSKINGVPVLGDRYHIKKVAEMKQVDEIIIAIPSGFRQELKEIVEECSKTKCKLK ILPGIGELIDGKVSMKKARDVEIEDLLGRDAINIDLEEISEYLHNQVVLITGGGGSIGSELCRQIATFNPKKLLILDNYE NNAYDIQNELRRKYPELNLEVLIASVRERDRIEEIFGQYLPEVIFHAAAHKHVPLMEANPQEAIKNNIFGTKNVAECADQ FGAKRFVLISTDKAVNPTNIMGATKRVAEMLIQSIDLTSKTEFVAVRFGNVLGSNGSVIPLFKRQIAEGGPVTVTHPEVT RYFMTIPEAVQLVIQAGSMASGGEIFVLDMGEPVKIIDLARNLIRLSGMEPDVDMDIKVVGLRPGEKLYEELLMDEEGLE STKHDKIFVGKPFFTDLKFLERELDILSDLLLLRDQEEVKEYMVKIVPTYHRETS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-101 | 48 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 1e-103 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Amet_0277 | YP_001318169.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 4e-106 | 46 |
| Amet_0277 | YP_001318169.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 6e-87 | 43 |
