Gene Information

Name : Amet_2707 (Amet_2707)
Accession : YP_001320518.1
Strain : Alkaliphilus metalliredigens QYMF
Genome accession: NC_009633
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 2723422 - 2724225 bp
Length : 804 bp
Strand : -
Note : TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: gme:Gmet_3097 flagellar transport protein FliP

DNA sequence :
ATGATGAAGATGAAAAATAAGATCCTAGTAAATCAAATGAATCGTTTTCGTTGGACTATGGTACTAATGATTAGTCTATT
TATAATTGTTATGATGACGTCTTCTACACAGGCTCAGCCAAATACCTTTCCCATACCATCTATAGGAATAAATGTTGAAG
AAGCTGACAATCCCCAAGAAGTAGCTGCATCCTTGCAAATTTTATTTTTATTAACCATTCTTTCTATTGCACCAGCAATA
CTGATTATGATGACAAGCTTTACTAGAATTGTCATCGTATTATCGTTTTTGAGGAATGCAATTGCAACACAGCAAACCCC
ACCAACGCAAATAATCATTGGACTGGCTTTGTTTTTAACTTTTTTCACAATGGCTCCTATTGCGACGGATATTAATACCA
ATGCGTTACAACCATACCTCGCTGAAGAGCTCGGTCAGGAAGAAGCACTGGAAAGGGCTATGGAGCCAATTAGAGAATTC
ATGTTTAGACAAACCAGGGAAAAGGATCTTGCTTTATTTATTGAAGTCTCAAATAGCGAGATGCCAACTGAAGTTGCAGA
CATTGCAACATCAACACTAATCCCTGCTTTTATTATTAGTGAACTAAAAACTGCTTTTCAAATGGGTTTTATTCTTTTCA
TTCCTTTTATCGTTATCGATATGGTCGTTGCCAGTACACTGATGGCCATGGGAATGATGATGCTACCACCAGCTATGATT
TCACTACCATTTAAACTACTATTATTTATTATGGTAGATGGTTGGAATATTTTAGTTCGTGCTTTAATAATGAGTTTCAA
TTGA

Protein sequence :
MMKMKNKILVNQMNRFRWTMVLMISLFIIVMMTSSTQAQPNTFPIPSIGINVEEADNPQEVAASLQILFLLTILSIAPAI
LIMMTSFTRIVIVLSFLRNAIATQQTPPTQIIIGLALFLTFFTMAPIATDINTNALQPYLAEELGQEEALERAMEPIREF
MFRQTREKDLALFIEVSNSEMPTEVADIATSTLIPAFIISELKTAFQMGFILFIPFIVIDMVVASTLMAMGMMMLPPAMI
SLPFKLLLFIMVDGWNILVRALIMSFN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 6e-17 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-17 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-22 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-22 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-22 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 5e-16 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 5e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amet_2707 YP_001320518.1 flagellar biosynthetic protein FliP VFG2338 Protein 6e-41 53
Amet_2707 YP_001320518.1 flagellar biosynthetic protein FliP VFG2016 Protein 4e-47 51
Amet_2707 YP_001320518.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-42 51
Amet_2707 YP_001320518.1 flagellar biosynthetic protein FliP VFG2494 Protein 2e-44 51