Gene Information

Name : Amet_1644 (Amet_1644)
Accession : YP_001319480.1
Strain : Alkaliphilus metalliredigens QYMF
Genome accession: NC_009633
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1734321 - 1735082 bp
Length : 762 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1389 putative manganese transport system ATP-binding protein

DNA sequence : 
ATGGAAAAGGATTATGTAGTTCAAGTTGATAACCTAACCGTGTCCTATTATGGAAATACAGCGCTCCAAAATATATCATT
TGCAGTTGAACCTAGTCAGCTAGTTGGGATTATAGGACCCAATGGTGCAGGAAAATCAACACTGATTAAAGCCATTTTAG
GGCTCATGCATATAGAGAAAGGAAATGTGAAAGTGTTTAATCAGATAATCCAAAAGGTAAATAAACGAATTGCATATGTT
CCCCAGCACAATGACATTGACTTGGATTTTCCTGTTTTGGTAGAAGAGGTTGTGATGATGGGAAGATATCCTCATCTCTC
CTGGTGGCAGTGGCCCAGTAAGTCTGATAAACAGAGTGTAGAAAAAGCCCTAGCAGAGCTGGGGGTAGAAGATTTGAAAA
AAAGACAAATTGGAGAACTGTCAGGAGGACAAAGACAGCGGGTGTTTTTAGCTAGAGCATTGGTCCAAGATGCAGAACTA
TTCTTTTTAGATGAACCTTTTTCAGGAATTGATGTCATTTCAGAAAATATTATCATTAAACAATTAAGAAATTTAAAAAA
GCAAGGGAAAACTATCTTTGTGGTACATCATGATTTAAGCAAAGCAGAAGCCTATTTTGATCAACTAATTTTATTAAATA
AAAATCTTGTAAAATATGGGGACAGTAAGGATGTATTCAAAATGGGGCTACTTCATAAGGCTTACAATGGGAGTATTGCT
ATGGGCAGGAATGAAGATCAATTAATGGTGGTGAGTCAATGA

Protein sequence : 
MEKDYVVQVDNLTVSYYGNTALQNISFAVEPSQLVGIIGPNGAGKSTLIKAILGLMHIEKGNVKVFNQIIQKVNKRIAYV
PQHNDIDLDFPVLVEEVVMMGRYPHLSWWQWPSKSDKQSVEKALAELGVEDLKKRQIGELSGGQRQRVFLARALVQDAEL
FFLDEPFSGIDVISENIIIKQLRNLKKQGKTIFVVHHDLSKAEAYFDQLILLNKNLVKYGDSKDVFKMGLLHKAYNGSIA
MGRNEDQLMVVSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 1e-49 49
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 2e-49 49
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-51 41
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-52 41
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 6e-52 41
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 5e-52 41
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-51 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amet_1644 YP_001319480.1 ABC transporter-like protein BAC0400 Protein 4e-54 47
Amet_1644 YP_001319480.1 ABC transporter-like protein BAC0440 Protein 4e-46 45
Amet_1644 YP_001319480.1 ABC transporter-like protein BAC0350 Protein 3e-52 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amet_1644 YP_001319480.1 ABC transporter-like protein VFG0526 Protein 3e-52 41