Gene Information

Name : Smed_5625 (Smed_5625)
Accession : YP_001314300.1
Strain :
Genome accession: NC_009621
Putative virulence/resistance : Unknown
Product : IstB ATP binding domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 593433 - 594233 bp
Length : 801 bp
Strand : +
Note : PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ret:RHE_PA00081 probable insertion sequence ATP-binding protein, IS21 family

DNA sequence :
ATGACGAACGTGGATCATGACGTGCTGATCGCAACGCTCGATCGGCTGAAGCTGACGGCGATCCGCGACCAGCTCGACAC
GTTGCTGGACGAGGCGGCTCGTTCGAAGATGACCTTGCGCGAGGCGCTGGCTTTCCTTGTGTCGCGCGAGATTGCCCGGC
GCGACGAGCGGCGGATATCGATGTCGAGCAAGCTGGCGCAGTTCCCGTTCGTGCGCGAATTGGACGGCTTCGACTTCGAG
GCGCAGCCCTCGCTGGATCAGGGGCAGATCAGGGAGCTTGCGACCTGCCGCTGGATCGCTCACGGTGATACCGTACTCTT
CCTTGGACCGCCCGGTACAGGCAAGACGCATCTGGCTGTGGGCCTCGGCCGCGAGGCCATCCGCCAGAATTACAACGTCC
AGTTCGTCACGGCGGCCACGCTAGTGGCGATGCTGGCGAAGGCTCACAACGACGGCTCGCTCGACAAACAGTTGACGATC
CTGTCGCGGCCGAAATTGCTGATCATCGACGAGCTGGGTTACTTGCCCTTCGAGGCCAATGCCGCCCACCTGTTCTTCCA
ACTGGTGTCTCGGCGCTACGAGAAGGGCTCGATCCTGATCACCTCAAACCGTTCCGTGGGCGAATGGGGAAGTGTTTTTG
GCGACCCTGTCGTCGCCACGGCGATATTGGACCGCCTGCTTCACCACTCGACGGTGATCACCATCCGGGGCGACAGCTAT
CGGCTTCGCGAAAAGCGCCGCTCCGGCCTTCTGCAGAAAGCCGGAGCGGCGCTCCAACCCAACGAAACCGCAAACCAATG
A

Protein sequence :
MTNVDHDVLIATLDRLKLTAIRDQLDTLLDEAARSKMTLREALAFLVSREIARRDERRISMSSKLAQFPFVRELDGFDFE
AQPSLDQGQIRELATCRWIAHGDTVLFLGPPGTGKTHLAVGLGREAIRQNYNVQFVTAATLVAMLAKAHNDGSLDKQLTI
LSRPKLLIIDELGYLPFEANAAHLFFQLVSRRYEKGSILITSNRSVGEWGSVFGDPVVATAILDRLLHHSTVITIRGDSY
RLREKRRSGLLQKAGAALQPNETANQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 1e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_5625 YP_001314300.1 IstB ATP binding domain-containing protein VFG1460 Protein 7e-38 42