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Name : Smed_5513 (Smed_5513) Accession : YP_001314199.1 Strain : Genome accession: NC_009621 Putative virulence/resistance : Virulence Product : RNA-directed DNA polymerase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3344 EC number : - Position : 479306 - 480565 bp Length : 1260 bp Strand : - Note : PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sme:SMb21045 putative reverse transcriptasematurase protein DNA sequence : ATGACTTCGATAGATACGACAGACAAGCCGTTTCGAATTGAGAAGCGGCAAGTGTACGAAGCTTACAAAGCGGTCAAAGC CAACCATGGCGCAGCCGGAGTGGACGGTGAGACCTTGGAGATGTTCGAGAAAGACCTTGCGAGAAATCTCTACAAGATCT GGAATCGGATGTCGTCCGGGACCTACTTTCCGCCACCGGTGCGCGCCGTCTCCATTCCGAAGAAGACTGGTGGCGAAAGG GTTTTGGGTGTGCCCACGGTCAGCGATCGGATCGCGCAGATGGTGGTCAAGCAGATGATTGAGCCGGATTTGGATTCCCT CTTTCTTCCGGACTCCTACGGATACAGGCCGGGAAAATCGGCGTTGGATGCCGTTGGGGTGACGCGTCAGCGGTGCTGGA AGTACGATTGGGTTCTGGAATTCGACATCAAAGGGCTGTTTGACAATCTTCCGCATGATCTCTTGCTGAAGGCGGTCAGA AAGCACGTCAAATGCAACTGGGCTCTGCTCTACATCGAAAGATGGCTGGTCGCGCCCATGGAAAAGAACGGAGCAGTCAT TGAGCGCACACGTGGTACCCCGCAAGGGGGCGTGGTCAGCCCAATCCTCTCGAATCTCTTCCTGCATTACGCGTTCGACG TCTGGATGACTCGGACGCACCCTGATCTTCCATGGTGTCGGTATGCCGATGATGGTCTCGTGCACTGCCGGACCGAGCAA GAAGCACAGGCCCTCAAGGCTGCGCTTCAAGCCCGGCTGGCAGAATGCGGACTTCAGATGCATCCGATCAAGACCCAGAT CGTCTACTGCAAAGATAATCGGCGTCGGAAAAGGTATCCGACCGTCAAATTTGACTTCCTTGGATACCAATTCCGGCCGC GACAGGTGGCGACGGCGCAGCAGGATGAGTTCTTCTGCGGCTACACCCCGGCGGCCAGCCCGACGGCGCTAAAGTCGATG CGGGCCACGATCAAGAGCTTGAACATTCCGCGGCAAACGCCGGGGACGCTGGCTGAAATCGCCAAACAGATCAATCCGCT CCTGCGGGGATGGATTGCCTATTATGGGCGGTTCAGTCGTTCGGCCCTGTTCTCTCTGGCTGACTACATCAATCGGAAGC TCAAGGCCTGGATTATGCGAAAGTACAAGCGCTTTCGGTTCCACAAAACTCGGGCTTCGCAGTTCTTGCGGCAACTTGCT CGAGATAATCGGGGCCTCTTCGTACACTGGCAGGCGTTCGGAACGAACCTGTTTGCCTGA Protein sequence : MTSIDTTDKPFRIEKRQVYEAYKAVKANHGAAGVDGETLEMFEKDLARNLYKIWNRMSSGTYFPPPVRAVSIPKKTGGER VLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVR KHVKCNWALLYIERWLVAPMEKNGAVIERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDGLVHCRTEQ EAQALKAALQARLAECGLQMHPIKTQIVYCKDNRRRKRYPTVKFDFLGYQFRPRQVATAQQDEFFCGYTPAASPTALKSM RATIKSLNIPRQTPGTLAEIAKQINPLLRGWIAYYGRFSRSALFSLADYINRKLKAWIMRKYKRFRFHKTRASQFLRQLA RDNRGLFVHWQAFGTNLFA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13526.1 | reverse transcriptase | Not tested | PAGI-7 | Protein | 2e-113 | 55 |
| unnamed | CAD33771.1 | putative reverse transcriptase | Not tested | PAI I 536 | Protein | 2e-81 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Smed_5513 | YP_001314199.1 | RNA-directed DNA polymerase | VFG1512 | Protein | 1e-81 | 47 |
