Gene Information

Name : Smed_5362 (Smed_5362)
Accession : YP_001314066.1
Strain :
Genome accession: NC_009621
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 329194 - 329886 bp
Length : 693 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sme:SMa2325 probable transcriptional regulator

DNA sequence : 
ATGACGGTGGAGCGTATTCTCGTCGTCGACGACGAACCGCAGATCCAGCGTTTCCTGCGTCCGGCGCTCATCGCTGCGGG
TTACGAAGTGGTGGAGGCGGCCGACGGGACCCAGGCGCTTAAGGCGGCCGCGACTGCGGCGCCCGACGTGATCATCCTCG
ATCTCGGGCTTCCTGACATGGACGGCAAGGATGTCGTCGCTAATATTCGCGCCTGGTCGCAGGTGCCGATCATCATCCTT
TCCGCACGGGACCGTGAAAGCGAGAAAATCGCGGCGCTCGACCTCGGCGCCGACGACTATATCGAGAAGCCCTTCGGCAT
CGGCGAGCTGACGGCGCGCATTCGTGCGGCATTGCGCCATCGCATTCAGATGGAGGGGGGCCAGGCGCAACTTTCGGCCG
ACGGTCTCTCTATCGACATGGTCAAACGCGCGGTCACCCGCGACGGCGAACCGCTGCGGCTGACGCCCAAGGAATATGAT
CTGCTCGTCATGCTCGCGCGGCACGCCGGACGGGTGGTCACCCATAAGACGCTGCTCGCATCCGTCTGGGGTGTGGCACA
TGGCGAGGATCTACACTATCTGAGGGTCTTCATCGGCCAGTTGCGCGGCAAGATAGAACGCGACCCAGGTCGTCCTAAGG
TCATCCGTACCGAGCCGGGCGTCGGGTACCGTTTCGTCGGTGACGAGAGCTGA

Protein sequence : 
MTVERILVVDDEPQIQRFLRPALIAAGYEVVEAADGTQALKAAATAAPDVIILDLGLPDMDGKDVVANIRAWSQVPIIIL
SARDRESEKIAALDLGADDYIEKPFGIGELTARIRAALRHRIQMEGGQAQLSADGLSIDMVKRAVTRDGEPLRLTPKEYD
LLVMLARHAGRVVTHKTLLASVWGVAHGEDLHYLRVFIGQLRGKIERDPGRPKVIRTEPGVGYRFVGDES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 2e-38 43
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 1e-38 43
SH0031 YP_251946.1 hypothetical protein Not tested SCCmec Protein 2e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_5362 YP_001314066.1 two component transcriptional regulator AE000516.2.gene3505. Protein 8e-30 44
Smed_5362 YP_001314066.1 two component transcriptional regulator NC_012469.1.7685629. Protein 3e-34 43
Smed_5362 YP_001314066.1 two component transcriptional regulator HE999704.1.gene2815. Protein 7e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_5362 YP_001314066.1 two component transcriptional regulator VFG1390 Protein 2e-30 42