|
Name : Smed_5196 (Smed_5196) Accession : YP_001313906.1 Strain : Genome accession: NC_009621 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.18 Position : 153240 - 155510 bp Length : 2271 bp Strand : - Note : PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: sme:SMa0682 decarboxylase, probable (lysine, ornithine, arginine) DNA sequence : ATGGAGTTCTACAAGGCATTCCCCATCGCTGTCATCGATGAAGATTACGAGGGTAAAAACGCTGCCGGGCGGGGCATGCG CAGCCTCGCAGAGGCGATTGAAAAGGAAGGTTATCGGGTCGTTGGAGGCCTCACCTATGAGGATGCACGCCGCCTCGTCA ACGTCTTCAACACCGAGTCCTGCTGGCTGATTTCAGTCGACGGGGCGGAATCAAGTACGACGCGATGGGAGATTTTAGCC GAGCTGCTCGCCGCGAAACGCTCCCGGAACAACCTGCTGCCAATCTTTCTGTTTGGCGACGATACAACGGCGGAAATGGT GCCGGCGCCCGTGCTGCGCCACGCCAATGCCTTCATGCGTCTCTTCGAGGATTCTCCGGAATTCATGGCGCGCGCAATCG TGCGCGCGGCGCAGAATTATCTGGAGAGGCTTCCGCCTCCAATGTTCAAGGCGTTGATGGAATACACGCTTCACGGCGCC TATTCCTGGCACACGCCAGGGCACGGAGGCGGGGTGGCATTTCGCAAGAGCCCGGTGGGGCAGCTCTTTTATGCGTTTTT CGGAGAGAACACATTGAGGTCGGACATTTCTGTGTCCGTCGGCAGCGTTGGTTCGCTCCTCGATCATGTTGGGCCGATTG GCGAGGGTGAGCGCAATGCTGCGCGCATATTTGGTGCGGACGAGACGCTGTTCGTTGTCGGCGGCACATCGACCGCCAAT AAGATCGTGTGGCACGGTATGGTCACTCGCAACGACCTCGTCCTCTGCGACCGAAACTGCCATAAATCGATCCTGCACTC GCTGATCATGACGGGTGCGACGCCGATTTACCTGACGCCCTCACGCAACGGCCTCGGCATCATCGGCCCAATTGCGAAGG AGCAGTTTACCCCGGAGGCAATCGCGCAGAAGATCGCCGCCAGTCCGTTTGCCGGTGAGACGAACGGTAAAGTGCGCCTG ATGGTGGTGACAAACTCCACATATGATGGGCTCTGCTACAACGTAGATGGAATCAAAGCGGCGCTCGGCGATGCGGTGGA GGTACTGCATTTCGACGAGGCCTGGTTTGCTTACGCCAATTTTCACGAATTCTACGATGGTTATCACGCGATCTCTTCGA CGAAGCCCGCGCGTTCGCAAGAAGCCATAACATTCGCAACCCAGTCGACGCACAAGCTGCTGGCCGCCTTCTCTCAAGCT TCAATGCTTCATGTGCAGCATGCCGAGGCGAAGCAACTCGACATCACACGCTTCAACGAAGCGTTCATGATGCACACATC GACATCGCCGCAATATGGGATCATCGCCTCGTGCGACGTGGCTGCTGCCATGATGGAGCAGCCGGCCGGGCGGGCGCTGG TACAGGAGACCATTGACGAGGCCATGAGTTTCCGCCGAGCCGTCAATGCGGTGCGGACACAGATGCAGGATTCCTGGTGG TTCGAAGTCTGGGAGCCCCCCATCGCGGATCGGGCACCGAGCGACGCCAAGTCGGATTGGGTTCTAAAGCCCGGTGATGC GTGGCATGGCTTCGAAGACCTAGCTGAGAATCACGTGATGGTTGACCCTATCAAGGTCACAATCCTTTCGCCCGGGCTCA ATGCGGGCGGAACGATGCTGGAGCATGGTATTCCGGCCGCAGTCGTTACGAAGTTCCTTTCTTCTCGCCGGATCGAAATC GAGAAAACCGGGCTCTACTCTTTCCTGGTGCTCTTCTCCATGGGGATCACAAGGGGCAAGTGGAGCACCCTGATCACCGA GCTCTTGAACTTCAAAGACCTCTATGATGCCAATGCCCCTCTTTCACGCGCCCTTCCCGCCCTCGCGGCAGCCCATCCGG ACGTCTACCGGACAATGGGCCTCAGAGATCTTTGCGAGAAAATTCACGACGTGTACCGCAGCGACGACGTGCCGAATGCC CAGCGCGAGATGTACACCGTGCTGCCCGAAATGGCACTGCGCCCGGCGGACGCCTACAACCGTCTGGTCAAGGGGTGCGT CGAGAGCATTGATATCGACGAACTGATCGGCCGGACACTCGCAGTCATGATTGTACCCTATCCGCCGGGAATCCCGCTCA TCATGCCTGGTGAGCGGATCACCGCCGCCACCAGATCAATCCAGGACTATCTCGTCTACGCCCGGAGTTTCGACAAAAAA TTCCCGGGATTTGAGACAGACATCCACGGACTCCGTTTCGTCGCGAACCCGAGTGGACGGAGATATCTCGTGGATTGCAT CGTCGAGGAGGGGCAAGATGATACCGCGTGA Protein sequence : MEFYKAFPIAVIDEDYEGKNAAGRGMRSLAEAIEKEGYRVVGGLTYEDARRLVNVFNTESCWLISVDGAESSTTRWEILA ELLAAKRSRNNLLPIFLFGDDTTAEMVPAPVLRHANAFMRLFEDSPEFMARAIVRAAQNYLERLPPPMFKALMEYTLHGA YSWHTPGHGGGVAFRKSPVGQLFYAFFGENTLRSDISVSVGSVGSLLDHVGPIGEGERNAARIFGADETLFVVGGTSTAN KIVWHGMVTRNDLVLCDRNCHKSILHSLIMTGATPIYLTPSRNGLGIIGPIAKEQFTPEAIAQKIAASPFAGETNGKVRL MVVTNSTYDGLCYNVDGIKAALGDAVEVLHFDEAWFAYANFHEFYDGYHAISSTKPARSQEAITFATQSTHKLLAAFSQA SMLHVQHAEAKQLDITRFNEAFMMHTSTSPQYGIIASCDVAAAMMEQPAGRALVQETIDEAMSFRRAVNAVRTQMQDSWW FEVWEPPIADRAPSDAKSDWVLKPGDAWHGFEDLAENHVMVDPIKVTILSPGLNAGGTMLEHGIPAAVVTKFLSSRRIEI EKTGLYSFLVLFSMGITRGKWSTLITELLNFKDLYDANAPLSRALPALAAAHPDVYRTMGLRDLCEKIHDVYRSDDVPNA QREMYTVLPEMALRPADAYNRLVKGCVESIDIDELIGRTLAVMIVPYPPGIPLIMPGERITAATRSIQDYLVYARSFDKK FPGFETDIHGLRFVANPSGRRYLVDCIVEEGQDDTA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 2e-118 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Smed_5196 | YP_001313906.1 | lysine decarboxylase | VFG1670 | Protein | 9e-119 | 44 |
