Gene Information

Name : Smed_4079 (Smed_4079)
Accession : YP_001312819.1
Strain :
Genome accession: NC_009620
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 539751 - 540557 bp
Length : 807 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb20058 putative ABC transporter ATP-binding protein

DNA sequence : 
ATGACTCTATCAGCGCGCGAAATCTCGTGGTCGGCCGGCGGGACCGACATCCTCAAGGAGGTCTCCCTGACCCTCGAGAC
GGGAGAGTTTCTCGGCATCATCGGCCCGAACGGTTCCGGCAAGACCAGCCTGATGTCGCTCATCGCCGGGATCCGCAAGC
CGAGAAAAGGAGAGGTGTTTCTGGACGGTTCTCCGATCGCTGCGCTCGGCCGCCGTGCGGTCGCCCAAAGGCTCGCACTG
GTGGAACAACAGGCCGAGACCGGCGAGCGGATAACCGCGCGCCAGGCAGTCGAACTCGGCCGCACACCCTATCTCGGGCC
GCTTTCGCCCTGGTCGCCTCAGGATGACGCAATCGTCGACGCGGCGTTGAGGAACGTCGACATGGGCCATCTTGCCGATC
GCCTATGGCACACGCTCTCGGGCGGTGAGCGGCAAAGGCTGCACATTGCGCGGGCACTGGCGCAGGAATCGAAGATTTTG
CTCCTCGACGAACCGACCAACCACCTCGACATCGGCCATCAGATCAGCCTGCTGGATCTCGTCCGCCGCCAGGACCGGAC
GGTGGTCGCCGCTCTCCACGACCTCAATCACGCCGCCATGTTCTGCGACCGGATCGCGGTCATGCAGGGCGGTCGGCTTG
TGGCACTCGGCCGCCCGCAGGAGGTGCTGACGGTCGAGCGCATCCGCGCAGTCTTCGGGATCGAAGTCGAGGTCGAGCAG
GAATTCGACGGAAGCTGCTTCATCCGCTACCGCGCAAGACGCCGGCAGCCGCGCCCGTTTTCCGCAATTGCCGCTGTCGG
AGCCTGA

Protein sequence : 
MTLSAREISWSAGGTDILKEVSLTLETGEFLGIIGPNGSGKTSLMSLIAGIRKPRKGEVFLDGSPIAALGRRAVAQRLAL
VEQQAETGERITARQAVELGRTPYLGPLSPWSPQDDAIVDAALRNVDMGHLADRLWHTLSGGERQRLHIARALAQESKIL
LLDEPTNHLDIGHQISLLDLVRRQDRTVVAALHDLNHAAMFCDRIAVMQGGRLVALGRPQEVLTVERIRAVFGIEVEVEQ
EFDGSCFIRYRARRRQPRPFSAIAAVGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-43 44
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 9e-38 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-34 42
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-34 42
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-34 42
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-34 42
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_4079 YP_001312819.1 ABC transporter-like protein BAC0164 Protein 2e-43 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_4079 YP_001312819.1 ABC transporter-like protein VFG1042 Protein 2e-43 44