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Name : Smed_3836 (Smed_3836) Accession : YP_001312581.1 Strain : Genome accession: NC_009620 Putative virulence/resistance : Virulence Product : TRAP dicarboxylate transporter subunit DctP Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1638 EC number : - Position : 291530 - 292501 bp Length : 972 bp Strand : - Note : TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMb20295 putative ABC transporter periplasmic substrate-binding protein DNA sequence : ATGAAAAAAGGATTGATTTCGCTCGCGCTTGCGGGGCTGCTCATGGCTTCGCAAGCCATGGCTCAAGAGGCGCGCACGCT GCGCCTGGGGATGCAAGGCACGGCCGGGGACCCGCAATTCGAGGGTGTCACCGAGGCCGCGCGCATCATCAAGGAAAAGT CCGGCGGTCGGCTGACGCTGGAAATCTTCCCCAATTCGCAACTCGGCACCTTTACCGAGATGATGGAGCAGGTGACACTC GGCGAACTCGACTTCACGCTCAATCCATTCGGGGGCATGGATGCCTGGGTTCCCCGGGCCGTGTTGGCGAGTACTGCCTA TGTCGTCGGCGACTTCGAGCATCTTCAAAAGATCATCGCCTCGGACTGGGGCAAGGGGATCGTCGACGAATTGCGAACCG AGCACAAGTGGCGCATGGTCGACTCCTGGTATTTCGGAACGCGGCACACGACGGCAAAGAAGCCCATCGAAAAGCCTGCG GATTTCAACGGCATGAAGCTGCGCGTACCGAATTCCGCGCCGCTTCTGACCTGGGCGAAGGCAATGGGCGCGAGCCCGAC CCCGGTCGCGTTCGCCGAAGTCTATCTGGCGCTCCAGACCAATCAGGTGGATGGTCAGGAAAACCCGCTGCCGATCATCG ACTCGATGAAATTCACCGAGGTGCAGACCCATGTTTCGTTGACCGGGCATCTGGTGCAGGACCAGGTCGTCCTCATGTCG GAGGATACGTGGAATGCGCTTGATCCCTCCGATCAGAAACTCGTCATGGAGGCATTCGAGGCTGGCGGGGCCCTCAACGA CAAGCTGGTTGCCAATAAGGAAACGAGTCTCGTCAGCGATTTTCGTGAGCGCGGAATCACCGTGGTCGAACCCGACAAGG CAGCTTTCCAGGAGGCGATGAAGCCCGTCTATGCCGATCTCGATGCGAGGTTCGGCGCGGGCACGGTACAGACGCTGCTC GATCTCCGATAA Protein sequence : MKKGLISLALAGLLMASQAMAQEARTLRLGMQGTAGDPQFEGVTEAARIIKEKSGGRLTLEIFPNSQLGTFTEMMEQVTL GELDFTLNPFGGMDAWVPRAVLASTAYVVGDFEHLQKIIASDWGKGIVDELRTEHKWRMVDSWYFGTRHTTAKKPIEKPA DFNGMKLRVPNSAPLLTWAKAMGASPTPVAFAEVYLALQTNQVDGQENPLPIIDSMKFTEVQTHVSLTGHLVQDQVVLMS EDTWNALDPSDQKLVMEAFEAGGALNDKLVANKETSLVSDFRERGITVVEPDKAAFQEAMKPVYADLDARFGAGTVQTLL DLR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC1779 | NP_231414.1 | C4-dicarboxylate-binding protein | Not tested | VPI-2 | Protein | 8e-67 | 44 |
| dctP-1 | YP_001217320.1 | C4-dicarboxylate-binding periplasmic protein | Not tested | VPI-2 | Protein | 8e-67 | 44 |
| VPI2_0027c | ACA01844.1 | C4-dicarboxylate-binding periplasmic protein | Not tested | VPI-2 | Protein | 9e-67 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Smed_3836 | YP_001312581.1 | TRAP dicarboxylate transporter subunit DctP | VFG1112 | Protein | 3e-67 | 44 |
