Gene Information

Name : Smed_4995 (Smed_4995)
Accession : YP_001313709.1
Strain :
Genome accession: NC_009620
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 1509578 - 1510237 bp
Length : 660 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb20832 putative cell surface polysaccharide export ABC-2 transporter ATP-binding protein

DNA sequence : 
ATGATCCGGTTCGAGCAGGCGACGAAATACGCCCGCACCAAGGGCATCAAGAAGCCGATCATCGAAGATGCCTCGCTGAC
ACTCAACCGCGGCAAGAGCGTCGGCCTGCTCGGCCGCAACGGCGCCGGCAAATCGACGCTGCTGCGGCTGATCGCCGGCG
CGATCAAGCTCGACGGCGGTCGAATCATCCGCCGCGGCAAGATTTCCTGGCCGCTCGGATTCGCCGGCAGCTTCCAGAGC
TCGATGACCGGCGAACAGAATGTGCGTTTCGTCGCCCGTATCTACGGTGTGAATACAGAGCAACTGATCGCCTATGTCGA
GGATTTTGCAGAGCTTGGCCCCTTCTTCAAGGCGCCGGTCGGCACCTATTCCTCCGGAATGAAGGCGCGCCTTGCCTTTG
GGTTGAGCATGGGCGTCAACTTCGACTATTATCTCGTCGACGAAATCACCGCCGTTGGTGATACAAATTTTAAGAAGAAG
TGTCAGGCTGTATTCGAAACTAGGCTACAGGACTCGGATGTGGTCATGGTCTCGCACAGCACCGGTACGATCCGCGACTA
TTGCGATTGCGGTGTGGTGCTGGAAAAAGGCAAGATGACCTATTATGAGAATGTCGAAGACGCAATACGCGCGCACGACA
AGAACATGAAGGAAAGCTAA

Protein sequence : 
MIRFEQATKYARTKGIKKPIIEDASLTLNRGKSVGLLGRNGAGKSTLLRLIAGAIKLDGGRIIRRGKISWPLGFAGSFQS
SMTGEQNVRFVARIYGVNTEQLIAYVEDFAELGPFFKAPVGTYSSGMKARLAFGLSMGVNFDYYLVDEITAVGDTNFKKK
CQAVFETRLQDSDVVMVSHSTGTIRDYCDCGVVLEKGKMTYYENVEDAIRAHDKNMKES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-50 49
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 2e-46 49
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 7e-47 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_4995 YP_001313709.1 ABC transporter-like protein VFG1449 Protein 4e-51 49
Smed_4995 YP_001313709.1 ABC transporter-like protein VFG0258 Protein 3e-47 48
Smed_4995 YP_001313709.1 ABC transporter-like protein VFG0696 Protein 3e-47 45
Smed_4995 YP_001313709.1 ABC transporter-like protein VFG2563 Protein 7e-46 44