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Name : Smed_4966 (Smed_4966) Accession : YP_001313680.1 Strain : Genome accession: NC_009620 Putative virulence/resistance : Virulence Product : TRAP dicarboxylate transporter subunit DctM Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1593 EC number : - Position : 1479807 - 1481120 bp Length : 1314 bp Strand : - Note : TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sme:SMb20979 putative large C4-dicarboxylate uptake permease protein, DedA family protein DNA sequence : ATGACCCTGTTGCATCTCGCCGGCCCCTCGCTTCTGGTCGTCGTGCTGTTCTTGCTGTCGACGCCGATCACCTGGGCCAT GGCGATCGGGGCGCTGGCCTTCTTTCTCATCAATATGGACATGATCCCGCTGGCCAACTTCGCGCAAGAAGTGGCGGAGG GCACTCAATCCGTATCCCTGTTGGCCCTGCCGCTATTTGTGCTTGCCGGCTGTATCATGAACGCATCCGGCATCACCCGG CGTTTGTTGACGCTTGCAGACGTGCTGGTCGGCCACATGACCGGCGCGCTGGCGCAGATGTGCACGGTACTCGGCACCTT GCTCGGCGGCCTTACTGCGTCTGCGAATGCCGATGCGGCGATGCTCGCCAAAACGCTCGGCGTCGAGATGTCTGAAAGAG GCTATAGCCGCGCCTTCGCTGCGGTCATCACGTCCTCGGCGGCCATCATCACCAGCCTTATTCCGCCCTCCATCGGCCTG ATCGTTTATGGCTTTCTGGCGGAGACTTCCATCGGCCGGCTCTTCGCGGCGGGGGTGGTGCCCGGCCTCCTTCTGGCAGC CGGGCTGATGGTGACCACCTATTTCATCGCCCGCAAGCGTGACTACAAACCGCTGCGCAAGCAGCGCGCCACCCGCGCGG AGGCGACCCGGGCGCTGATCGACGGCCTCTGGGCGCTGTCGATCCCGGTGGTGATCTTCGCGGGTACGCGGTACGGTCTT TTCACGACCACCGAAGCCGGTGCCGTGGTCGTCGTGTACGTGCTCTTTGTCGCTGTGTTCGGCTACCGGGAGTTCACCGT CCGCCAGATTCCGGAGGTTTTGGCCGAAGCTGTACGCGATTCAGCCGTGGTGATGATCATGATCTGCGCGGCGGCAGCCT TCGGTTTCTATCTCGCCTGGGAGCAGGTGCCGCAGGCCATGTCGGGCTGGCTCGGCGAAGCGACGGACAACCCGCTCCTG ATGCTGCTCCTCATCAACGTGCTGCTGATCGTCATCGGGACGGCAATCGAGGGATCGGCGGCGCTGATCATCCTCACGCC GATGCTGATTCCTCTCATCGACGGCGTAGGCATCGATCGCGTGCATTTCGGCATCGTCTTCATCACCAATCTGACCATTG CCGGTATTACACCGCCGGTTGGGGGGCTGATGTATATTTCGTCCATGGTGCTGAAGGTGCCGATGATGGCCTATGCACGC GAGGTGCTGCCCTATCTGGCGATGATGATGGCCCTTCTCATCGTGCTGAGCATGTTTCCGCAACTGTCGCTTTGGTTGCC TGATCTGGTCTATGGGACGTCCGCGGTCCAATAG Protein sequence : MTLLHLAGPSLLVVVLFLLSTPITWAMAIGALAFFLINMDMIPLANFAQEVAEGTQSVSLLALPLFVLAGCIMNASGITR RLLTLADVLVGHMTGALAQMCTVLGTLLGGLTASANADAAMLAKTLGVEMSERGYSRAFAAVITSSAAIITSLIPPSIGL IVYGFLAETSIGRLFAAGVVPGLLLAAGLMVTTYFIARKRDYKPLRKQRATRAEATRALIDGLWALSIPVVIFAGTRYGL FTTTEAGAVVVVYVLFVAVFGYREFTVRQIPEVLAEAVRDSAVVMIMICAAAAFGFYLAWEQVPQAMSGWLGEATDNPLL MLLLINVLLIVIGTAIEGSAALIILTPMLIPLIDGVGIDRVHFGIVFITNLTIAGITPPVGGLMYISSMVLKVPMMAYAR EVLPYLAMMMALLIVLSMFPQLSLWLPDLVYGTSAVQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0395_A1375 | YP_001217318.1 | hypothetical protein | Not tested | VPI-2 | Protein | 2e-34 | 42 |
| VPI2_0025c | ACA01842.1 | TRAP dicarboxylate transporter DctM subunit | Not tested | VPI-2 | Protein | 2e-34 | 42 |
| VC1777 | NP_231412.1 | hypothetical protein | Not tested | VPI-2 | Protein | 2e-34 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Smed_4966 | YP_001313680.1 | TRAP dicarboxylate transporter subunit DctM | VFG1110 | Protein | 1e-34 | 42 |
