Gene Information

Name : Smed_4639 (Smed_4639)
Accession : YP_001313369.1
Strain :
Genome accession: NC_009620
Putative virulence/resistance : Unknown
Product : ABC transporter-like protein
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG1125
EC number : -
Position : 1148729 - 1149667 bp
Length : 939 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb21146 putative choline uptake ABC transporter ATP-binding protein

DNA sequence : 
ATGATCCAAATAGAAGAAGTTACCAAGCGCTATGGCGATACGACGGTCGTGAACGGTGTCACGCTGACGGTCGCACCGCA
TACGGTCACCGTTATCGTCGGCACCTCCGGCTCAGGCAAGACGACGCTCCTCAGAATGATCAACCGCCTCGTCGAACCGA
CGGCGGGGATCGTCAAGATCGACGGCGAGGACAATCGGTCGATCCCGGGTTACGAATTGCGGCGGCGCATCGGCTACGCC
ATTCAGGGCCACGGTCTTTTCCCGCATCGCACGGTCGCTCAGAACATCGCGACCGTGCCGACATTGCTCGGCTGGGAGAA
GGACAGGACCGAAGCCAAGGTCGAAGAATTGCTGAAGCTCTTCCAGCTCGATCCGGCGGACTTCGGGCCGCGCTACCCTC
ACGAGCTTTCCGGCGGACAGCAGCAGCGGGTGGGCGTTGCGAGAGCGCTTGCGGCGGAGCCAAACGTGCTTCTGATGGAC
GAACCCTTCGGTGCGCTTGATCCGATCATCCGCTCCAAGGCTCAGGAAGACCTGGCCGCCATTCAGAAGCACTTCGGAAC
CACGATCATCCTCGTTACGCATGACATGGAAGAGGCTTTCCATCTCGCCGACAAGATCGCGGTGATGGACAAGGGCGAGG
TGGTGCAATATGCGACCCCCGCCGAAATGCTTGTCAAGCCCGCCACGCCCTTCGTCGAGACCCTGGTTGGCGCCAGCGAG
CGTCCGTTTCGGCTGCTCGGCATCGAAACGGTCGGCGAGGCGGTCGAGCCCGGTTCGGCGGAGGGCCGGCCCGTTCCGGA
GGTCCTCAGCCAGCGCGATGCGCTGTCGGAACTTCTGTGGTCGGGCCGCTCGGCGCTGCCGGTCGCGGCGGCGAACGGCG
AGATTCTCGGCAGGGTTACTCTCCAAGCCATCGTGAAGCGTGCGGCGAGGCCGCGATGA

Protein sequence : 
MIQIEEVTKRYGDTTVVNGVTLTVAPHTVTVIVGTSGSGKTTLLRMINRLVEPTAGIVKIDGEDNRSIPGYELRRRIGYA
IQGHGLFPHRTVAQNIATVPTLLGWEKDRTEAKVEELLKLFQLDPADFGPRYPHELSGGQQQRVGVARALAAEPNVLLMD
EPFGALDPIIRSKAQEDLAAIQKHFGTTIILVTHDMEEAFHLADKIAVMDKGEVVQYATPAEMLVKPATPFVETLVGASE
RPFRLLGIETVGEAVEPGSAEGRPVPEVLSQRDALSELLWSGRSALPVAAANGEILGRVTLQAIVKRAARPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 8e-53 51
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 6e-53 51