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Name : Cbei_4629 (Cbei_4629) Accession : YP_001311693.1 Strain : Clostridium beijerinckii NCIMB 8052 Genome accession: NC_009617 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 5360510 - 5362372 bp Length : 1863 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cpe:CPE0 DNA sequence : GTGAAGAATTGGAAGACTTTTATAGTTATGATAATCGATATGTTTATGGTTAATATGGCATATCTTTTCTCAATAAATAT AACCAATAGTGGAGATTTTACATTAATTGCGAAAATATACACTCATGATTGTATAGCGTTAAGTTTAATTTATTTAGTAT GTTTTTACTTGTTTAAAATGTATGAAAGTCTATGGCATTTAACTGGTACTGACGAGTTTTTGTTAGGTGTTGGTGGAAAT ATTTTAGCAGGAATAATATCAATAGGGTATACTAGAATTCTAGGTAATACAATTCCGTTAAATGTTTCGGTTGTCGGAAT ACTTTTAAGTATTTTCTTTGTATTAGGATATAGAATATTGTATAGGGTATATAGAAGAACTCTTTTGTACATACCATTTA AATACTCATCAGACCAAAGAAGAGTAATGATAGTCGGGGCTGGCTCGGCTGGAACTATGCTTATTAATGAAATGATGGCA AGAAGAGAACTAAAGTATAATCCGATAGTTCTTATAGATGATGATAAAAGTAAGCTTGGAAAAAGAATATCAGGTGTAAA AATAGAAGGAAACAGATACGATATACCTTATATAGTTGGAGATCAGGAAATAGATTTAATATTAATTGCGATTCCATCTC TTGATGCGAAAAATAAGGCGGAAATAATTGAAATTTGTAAGAATACAAATTGTAAACTTCAAATAATACCTGGAATGTAC GAAATACTAAGTGGAGACGCTACAGTTAGTAGAATAAAAGATGTTGACTTAGAAGATTTGCTTGGAAGAGATCCTATTCA ACTTGATAATAAAGGGATTTCAGATTATATAGAAGGAAAGACTATATTAGTAACTGGAGGGGGAGGATCAATAGGTTCGG AACTTTGCAGACAAATTTCTGTATATAATCCTAAAAGACTTATAATATTTGATATTTATGAAAACAATGTATATGATATA CAAAATGAACTTAGAGAAGAGTTTCCAGACATGAATCTTACTGTATTAATAGGTTCAGTTAGGGATAAAAAGAGACTTCA TGAAATATTTACAAAATATAGAGTAAATGTGGTATTCCATGCAGCAGCACATAAGCATGTGCCTTTAATGGAAGATAGTC CTAAAGAGGCTATAAAAAACAATGTTTTTGGAACTTTGAATTTAGCATTAGAAGCAAGTGAGGCTAACGTAGAAAGATTT GTTATGATTTCAACAGATAAAGCGGTTAACCCAACTAATATTATGGGAGCAACAAAAAGATTATGTGAAATGATCATTCA AGCCATGGATAAGCAGTCTAGGACAGAATTTGTTGCGGTTAGATTTGGAAATGTGCTTGGAAGTAATGGATCAGTAATAC CATTGTTCAAAAGACAAATTGCTAATGGTGGCCCTGTAACTGTAACTCATAAAAAGATTATTAGATACTTTATGCTAATT CCAGAAGCTGCGCAGTTAGTGCTTCAAGCCGGTGCTTTTGCAAGAGGCGGAGAAGTTTTTGTATTAGATATGGGAAAACC AGTTAAAATTTATGACTTGGCATGTGATTTAATAAGGCTTTCAGGGCTTGAACCCAATAGAGATATAAAAATTGTAGTTA CAGGTCTTAGACCAGGAGAAAAGCTATACGAAGAACTTTTAATGAGTGAAGAAGGCTTAGAAAATACGGTTCACAATAAA ATATATGTAGGTAAACCAACATTTGAAGATATGAATAGCTTAACAATTAAGCTGGAGCAATTACAAAAGTTATTGGAGCT TAGCGATATATCAGAGATTAAGCATCAAATGCAAAAGATAGTTCCAACATATCATTATAAAAACGAAGATGAAGTGGCTG CAGAAAATGCGGATAAGGAGTAA Protein sequence : MKNWKTFIVMIIDMFMVNMAYLFSINITNSGDFTLIAKIYTHDCIALSLIYLVCFYLFKMYESLWHLTGTDEFLLGVGGN ILAGIISIGYTRILGNTIPLNVSVVGILLSIFFVLGYRILYRVYRRTLLYIPFKYSSDQRRVMIVGAGSAGTMLINEMMA RRELKYNPIVLIDDDKSKLGKRISGVKIEGNRYDIPYIVGDQEIDLILIAIPSLDAKNKAEIIEICKNTNCKLQIIPGMY EILSGDATVSRIKDVDLEDLLGRDPIQLDNKGISDYIEGKTILVTGGGGSIGSELCRQISVYNPKRLIIFDIYENNVYDI QNELREEFPDMNLTVLIGSVRDKKRLHEIFTKYRVNVVFHAAAHKHVPLMEDSPKEAIKNNVFGTLNLALEASEANVERF VMISTDKAVNPTNIMGATKRLCEMIIQAMDKQSRTEFVAVRFGNVLGSNGSVIPLFKRQIANGGPVTVTHKKIIRYFMLI PEAAQLVLQAGAFARGGEVFVLDMGKPVKIYDLACDLIRLSGLEPNRDIKIVVTGLRPGEKLYEELLMSEEGLENTVHNK IYVGKPTFEDMNSLTIKLEQLQKLLELSDISEIKHQMQKIVPTYHYKNEDEVAAENADKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 5e-103 | 48 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-101 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cbei_4629 | YP_001311693.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 3e-103 | 48 |
| Cbei_4629 | YP_001311693.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 4e-86 | 46 |
