Gene Information

Name : Cbei_4256 (Cbei_4256)
Accession : YP_001311322.1
Strain : Clostridium beijerinckii NCIMB 8052
Genome accession: NC_009617
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 4915930 - 4916709 bp
Length : 780 bp
Strand : -
Note : TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: cno:NT01CX_1916 flagellar biosynthetic protein FliP

DNA sequence : 
ATGAAAAATAATAAAAAGAGAATTGCATTTACATTCATGATGGCTCTTGGGATTATGATATTTTGCACTATAAGCGCATC
AGCAGCTCCAAGTAGTACAAGCGTGCCGCAACTAAATGTATCTTTTGGAGACGGAAATAGCACGCCACAGGATTATGTAT
CGAGTATTAAAATATTGATATTTTTTACGATACTATCATTATTGCCATCAATAGTGATAATGATGACATCCTTTACCAGA
ATAGTAGTGGTATTTTCATTCCTTAAGAGTGCAATGGGAGTGCAACAAGCTGTTCCAAATCAAATATTGACAGGGCTTGC
TATATTTTTAACTTTGTTTATTATGCAACCTGTTTATAATGAGGTAAATACTAAAGCAATACAACCATATTTAGAAAATA
AAATAACTCAGGATCAAGCTTTTGAAGAGGCATCTAAACCTCTGAAAGCATTTATGCTCAAACAAACGAGGGAAAAGGAT
TTAGAGTTATTTGTTGAAATAGGTGGAGTAGATAAAGAGAATTTAACAAAAGAGAATGTTTCATTTACAACATTAATTCC
AGCCTTTGCGATAAGTGAATTAAAGACAGCCTTTCAAATAGGATTTTTAATATATTTACCGTTTTTAGTTATAGACATGG
TGGTATCTAGTGTTCTTATGTCTATGGGTATGTTTATGCTACCTCCTACGATGGTATCATTGCCTTTTAAATTGATATTA
TTTGTAATGGTAGATGGCTGGTATTTACTGGTGAAGTCTTTAATACAGAGTTTTATGTGA

Protein sequence : 
MKNNKKRIAFTFMMALGIMIFCTISASAAPSSTSVPQLNVSFGDGNSTPQDYVSSIKILIFFTILSLLPSIVIMMTSFTR
IVVVFSFLKSAMGVQQAVPNQILTGLAIFLTLFIMQPVYNEVNTKAIQPYLENKITQDQAFEEASKPLKAFMLKQTREKD
LELFVEIGGVDKENLTKENVSFTTLIPAFAISELKTAFQIGFLIYLPFLVIDMVVSSVLMSMGMFMLPPTMVSLPFKLIL
FVMVDGWYLLVKSLIQSFM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-26 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-25 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-26 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-26 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-26 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-26 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-26 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-23 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-23 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cbei_4256 YP_001311322.1 flagellar biosynthetic protein FliP VFG2016 Protein 3e-45 53
Cbei_4256 YP_001311322.1 flagellar biosynthetic protein FliP VFG2494 Protein 9e-44 53
Cbei_4256 YP_001311322.1 flagellar biosynthetic protein FliP VFG1259 Protein 5e-48 52
Cbei_4256 YP_001311322.1 flagellar biosynthetic protein FliP VFG2338 Protein 5e-43 50
Cbei_4256 YP_001311322.1 flagellar biosynthetic protein FliP VFG0394 Protein 2e-24 43
Cbei_4256 YP_001311322.1 flagellar biosynthetic protein FliP VFG0519 Protein 2e-23 41
Cbei_4256 YP_001311322.1 flagellar biosynthetic protein FliP VFG0188 Protein 1e-25 41