Gene Information

Name : Cbei_4001 (Cbei_4001)
Accession : YP_001311067.1
Strain : Clostridium beijerinckii NCIMB 8052
Genome accession: NC_009617
Putative virulence/resistance : Resistance
Product : helix-turn-helix domain-containing protein
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 4595101 - 4595484 bp
Length : 384 bp
Strand : +
Note : PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: dsy:DSY0576 hypothetical protein

DNA sequence :

ATGAATTATGAAGCTTGTATAAAAAAGTCCATTGAATATATAGAAAATAATCTAAATAAGAAAATACAACTAAAGGAACT
TGCAGATAAGGCCTTTTTATCCAAATACCACTTTCATAGGGTTTTTCATTCAGTGGTTGGAGAACCTGTTGCTGAATATA
TTCGTAAAAAAAGATTAGAGGAAGCTGCAAATGAACTATTAACTACAGAAAATAAGATTATAGATATAGCGCTAAAATAT
CAATTTAGTAATCAGGAATCATTTACTAAGGCTTTCAAAAAGCTTTATGGAATCCCCCCTAAGGAATTTAGGAAAAACAA
AATAAATTTAACAACAATACATTTAAGAAAGAATTCTACAACTTACCTTTCTATGGCTGCTTAG

Protein sequence :

MNYEACIKKSIEYIENNLNKKIQLKELADKAFLSKYHFHRVFHSVVGEPVAEYIRKKRLEEAANELLTTENKIIDIALKY
QFSNQESFTKAFKKLYGIPPKEFRKNKINLTTIHLRKNSTTYLSMAA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
tetD	AAL08447.1	putative transcriptional regulator TetD	Not tested	SRL	Protein	2e-14	43
tetD	AEA34665.1	tetracycline resistance protein D	Not tested	Not named	Protein	2e-14	43

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Cbei_4001	YP_001311067.1	helix-turn-helix domain-containing protein	NC_010558.1.6276025.	Protein	7e-15	43

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Cbei_4001	YP_001311067.1	helix-turn-helix domain-containing protein	VFG1038	Protein	6e-15	43