Gene Information

Name : Tmel_0035 (Tmel_0035)
Accession : YP_001305299.1
Strain : Thermosipho melanesiensis BI429
Genome accession: NC_009616
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 39157 - 39834 bp
Length : 678 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGATTATTAAAGCAAAAAATCTTACAAAAGTTTATGGAAAAAGGGAGAGAGTTGTAGCATTAAAAGACATAAATCTTGA
AATTGAAGAAGGGGAAATTGTAGCGATTTTAGGTCCCTCAGGGTGCGGTAAAACAACACTTTTAAATTGTCTTTCAGGGT
TAGATGAACTAACATCTGGTAGTGTAGAAGTTCTAGGGAAAAGTTTAACTGGCATGAATGAAGAGGAAAAAACAAAATTT
CGCTCTGTGTATATGGGATTTATTTTTCAGTTTTTCAATTTAATCCCCGTGTTAAATGCAATTGAAAATGTAGAATTACC
ACTTTTAATATCCAAAAAATTAAAAGTAAGTGAGGTAAGAAAAAGGGCATTAGATTGGCTTGAAAAACTTCACATTGCTC
ATAGAGCAAAGGCTTATCCAAGTGAGATGTCCGGAGGAGAACAACAAAGAGTTGCAATAGCAAGAGCTTTGATAAATAAT
CCTAAAATTGTTTGGGCTGATGAACCAACAGGAGCTCTTGATACAAAAAACAGTGAGGAAATAATGGATATTATTTTGAA
TATGAATAGGGAACTAAATACAACTTTTGTTATTGTAACTCATGATCCAAATGTGGCTAAAAAGGCAAATAGAATAATTA
GAATGGATAGTGGAAGGATTTTATCAGAAGGAGTGTAA

Protein sequence : 
MIIKAKNLTKVYGKRERVVALKDINLEIEEGEIVAILGPSGCGKTTLLNCLSGLDELTSGSVEVLGKSLTGMNEEEKTKF
RSVYMGFIFQFFNLIPVLNAIENVELPLLISKKLKVSEVRKRALDWLEKLHIAHRAKAYPSEMSGGEQQRVAIARALINN
PKIVWADEPTGALDTKNSEEIMDIILNMNRELNTTFVIVTHDPNVAKKANRIIRMDSGRILSEGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-34 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-34 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmel_0035 YP_001305299.1 ABC transporter-like protein NC_012469.1.7686878. Protein 5e-40 46
Tmel_0035 YP_001305299.1 ABC transporter-like protein CP001581.1.gene598.p Protein 4e-40 45
Tmel_0035 YP_001305299.1 ABC transporter-like protein CP001581.1.gene798.p Protein 1e-35 45
Tmel_0035 YP_001305299.1 ABC transporter-like protein NC_008702.1.4606598. Protein 3e-31 43
Tmel_0035 YP_001305299.1 ABC transporter-like protein NC_012469.1.7685735. Protein 7e-35 42