Gene Information

Name : BDI_0539 (BDI_0539)
Accession : YP_001301937.1
Strain : Parabacteroides distasonis ATCC 8503
Genome accession: NC_009615
Putative virulence/resistance : Unknown
Product : seryl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0172
EC number : 6.1.1.11
Position : 640095 - 641369 bp
Length : 1275 bp
Strand : +
Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA

DNA sequence :
ATGTTGACAATCAAATTAATCACTGAAAACACGGATGCCGTAATCCGTGGACTGGAAAAGAAACATTTTAAGGGTGCGAA
AGAAAGCATCGATAAAGTGTTGGAATTGAATGATAAAAGACGTATCGCACAAAATCAATTAGATAAGAACCTAGCGGAGG
TAAACGCAACCTCGAAGTCGATCGGACAATTAATGAAAGAGGGCAAGAAGGAAGAGGCGGAGGCCGCTAAGAAACATGTT
TCCGAGATCAAGGAGGTGAGCAAGGCTTTGCAGGTTGAGATGGATCAGGCTGCCGAGGAGCTGCAGAACTTACTTTATAC
GATCCCGAACGTACCTTATGATGAGGTACCCGAGGGTATCTCTGCGGAGGACAATGTGGTAGAGAAAATGGGAGGTATGG
AAACGGAACTTCCGAAGAACGCTCTTCCGCACTGGGAATTGGCGAAGAAATATGATTTGATTGATTTCGATCTGGGTGTT
AAGATCACGGGAGCAGGTTTCCCGGTCTATAAAGGACAGGGCGCTCGTTTGCAACGTGCGTTGATCAACTTCTTCTTGGA
TGAGGCCCGTGACGCCGGTTACTTGGAGATCATGCCGCCTACGGTGGTGAACTCGGCTTCCGGTTATGGTACGGGACAGC
TTCCAGATAAGGAGGGACAGATGTATCATTGCGAGGTAGACGACCTCTATTTGATCCCGACAGCGGAGGTGCCCGTGACA
AATATTTACCGGGATGTCATTCTGGATGAGAAGCAGTTACCGATCAAGAATTGCGCTTATACACAATGCTTCCGTCGTGA
GGCCGGATCTTATGGCAAGGATGTACGTGGTTTGAATCGTTTGCACGAATTTTCTAAGGTGGAGTTGGTTCGGATCGATA
AACCGGAGCACTCTAAGCAATCTCACCAAGAGATGTTGAATCATGTGGAGGGATTACTTCAGAAGTTGGAGTTGCCGTAT
CGCATCCTTCGTCTTTGTGGGGGTGATATGAGTTTCACGGCTGCCCTTTGCTTTGACTTCGAGGTGTATTCCGAGGCACA
ACAACGCTGGTTGGAAGTTAGCTCCGTGTCCAACTTCGATACGTATCAAGCCAACCGCTTGAAATGCCGCTATCGTGACG
AGAATAAGAAAACGCAACTTTGCCATACCTTGAATGGTAGTGCCTTGGCTTTACCTCGCATCGTAGCCGCCTTATTGGAA
AACAACCAAACCCCCGAGGGCATCCGCATCCCGAAAGCGTTGATCCCTTACACTGGGTTTGATATGATTAAATAA

Protein sequence :
MLTIKLITENTDAVIRGLEKKHFKGAKESIDKVLELNDKRRIAQNQLDKNLAEVNATSKSIGQLMKEGKKEEAEAAKKHV
SEIKEVSKALQVEMDQAAEELQNLLYTIPNVPYDEVPEGISAEDNVVEKMGGMETELPKNALPHWELAKKYDLIDFDLGV
KITGAGFPVYKGQGARLQRALINFFLDEARDAGYLEIMPPTVVNSASGYGTGQLPDKEGQMYHCEVDDLYLIPTAEVPVT
NIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDKPEHSKQSHQEMLNHVEGLLQKLELPY
RILRLCGGDMSFTAALCFDFEVYSEAQQRWLEVSSVSNFDTYQANRLKCRYRDENKKTQLCHTLNGSALALPRIVAALLE
NNQTPEGIRIPKALIPYTGFDMIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
serS YP_003446791.1 seryl-tRNA synthetase Not tested The aminoglycoside resistance gene cluster Protein 2e-64 43