|
Name : clpA (FP0747) Accession : YP_001295666.1 Strain : Flavobacterium psychrophilum JIP02/86 Genome accession: NC_009613 Putative virulence/resistance : Virulence Product : ATPase with chaperone activity ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 954050 - 956605 bp Length : 2556 bp Strand : - Note : - DNA sequence : ATGGATGATAATTTTTCACCAAGAGTCAAAGATGTAATTACTTATAGCAAAGAAGAAGCCTTACGTTTGGGTCACGATTT TATTGGTACCGAACATTTAATGCTTGGTATGCTACGTGACGGAAATGGTACAGCAATTTCTATATTAAACAATCTTTCTA TCGATTTAAATCATTTGCGTAGAAAAGTAGAAACACTAAGCCCTGCAAATCCTAACGTAATTGTAAGCAACAATAAGAAA AATTTGCACCTTACAAGACAAGCCGAAAGGGCTCTAAAAACTACTTTTCTAGAAGCTAAGGTTTTTCAAGCTACATCAAT AAGTACTGCACATTTGCTGTTATGTATTTTGCGTAACGAGAATGACCCAACTACTAAATTGCTTAATAAATTACAAATTG ACTACGATGTAGCCAAAGAACAATATTTGAATATGACACCAACAAATAACGAAGAAGATTTTCAAGATAATTTTCCTAAA AACGAATCTTCCTACGGAGATGATTCAGGACAAGATGACAGTATAAAAGCAGATAATTTCAGTAATCCTGCCAACAAATC GAATAAAAAATCGAAAACACCCGTTTTAGACAATTTCGGTAGAGATTTAACCGAAATGGCAGAAGAAGGAAAACTAGATC CTGTTGTGGGTCGTGAAAAAGAAATAGAACGTGTTTCTCAAATTTTAAGTCGAAGAAAAAAGAATAACCCTTTACTTATA GGGGAACCTGGTGTGGGAAAATCTGCTATTGCCGAAGGTTTAGCTTTGCGCATTATACAAAAAAAAGTTTCTAGAATATT ATTCGGAAAACGTGTTGTAACCCTAGATTTAGCCAGCCTTGTAGCCGGCACAAAATACCGAGGACAATTTGAAGAGCGCA TGAAAGCCGTAATGAACGAACTCGAAAAAAACAATGATATTATCCTTTTTATCGATGAAATTCATACCATAGTTGGCGCT GGCGGTGCCACTGGCTCGTTAGATGCTTCTAATATGTTTAAACCCGCTTTGGCTCGTGGCGAAATTCAATGTATTGGAGC TACAACACTCGACGAATACCGTCAATATATAGAAAAAGATGGCGCTTTAGAAAGACGCTTTCAGAAAGTAATTGTCGAAC CAACTTCGGTTGAAGAAACCATTACCATCTTACATAATATTAAAGATAAATATGAAGACCATCATAATGTAACTTACACC GATGAAGCCATCGAAGCTTGTGTAAAACTAACAGATCGTTATATGTCTGAGCGATTTTTACCAGACAAAGCGATAGATGC TCTTGACGAAGCTGGTTCTCGTGTGCACATCACAAACATTGATGTTCCTAAAAAAATTCTAGAATTAGAACGCCAATTAG AAGAAGTTCGTGAACTAAAAAATTCAGTTGTAAAAAGACAAAAATATGAAGAAGCAGCCAAGCTTCGTGATGATGAGAAA AAGCTAGAAAAAGACCTAGCCATTGCTCAGGAAGAATGGGATGATGATGCTAAAAATAACAAAATTATAGTATCCGAAGA TAATGTTGCCGATGTGGTTTCTATGATGACAGGAATTCCTGTAAATCGTATTGCACAAACCGAAAGCAATAAACTAGCCC ATTTACCAGAACTTATTCAAAATAAAGTAATCGGACAAAACGAAGCAGTACTAAAAATTGCTCGTGCAATACAACGAAAT CGTGCTGGATTGAAAGATCCAAACAAACCCATTGGGTCCTTTATTTTCCTTGGACAAACTGGTGTTGGAAAAACACAATT AGCCAAAATTTTAGCCAAAGAATTATTCGATTCTGAAGATGCACTAGTTCGTATCGATATGAGTGAATATATGGAAAAAT TCGCTGTTTCTCGTCTAGTTGGAGCGCCTCCAGGGTATGTTGGTTACGAAGAAGGCGGGCAACTAACAGAAAAAGTGCGT CGTAAACCGTATTGTGTGGTATTATTAGACGAAATCGAAAAAGCACACCCAGATGTTTTTAACATGATGCTACAAGTACT TGACGATGGCTATATGACGGATAGTTTGGGACGAAAAATCGATTTTAAGAACACAATTATCATCATGACTTCTAACGTTG GAGCTAGACAATTGAAAGATTTTGGTCAAGGAGTTGGTTTTGGCACTGCTGCCAAAGTTTCGCAAGCAGATGATAACTCG AAAAGCATTATCGAAAACGCACTAAAGAAAACATTTGCACCAGAATTTTTAAACAGAATTGACGATGTTATTGTATTTAA TGCTTTAGAAAAAGAAGATATCAACTCGATTATCGAAATTGAATTAAACAAATTATACGCACGAGTTAAAGAATTAGGCT ACTCCCTTTCTTTATCAGACAAAGCAAAAGCTTATGTTGCCGAAAAAGGATTTGACAGACAGTTTGGTGCTCGTCCGCTA AAAAGAGCCATTCAAAAATATGTAGAAGATGTGCTGGCTGAGGAAATTATCACCTCAAAAATTGCTTCTGGAGACGAAAT ATTTATGGATTTTGAAGAAGGAGAAACTGAGTTAAAAGTTAGCATTCGAAAAAAAACTGAAGAACCAACAAGTTGA Protein sequence : MDDNFSPRVKDVITYSKEEALRLGHDFIGTEHLMLGMLRDGNGTAISILNNLSIDLNHLRRKVETLSPANPNVIVSNNKK NLHLTRQAERALKTTFLEAKVFQATSISTAHLLLCILRNENDPTTKLLNKLQIDYDVAKEQYLNMTPTNNEEDFQDNFPK NESSYGDDSGQDDSIKADNFSNPANKSNKKSKTPVLDNFGRDLTEMAEEGKLDPVVGREKEIERVSQILSRRKKNNPLLI GEPGVGKSAIAEGLALRIIQKKVSRILFGKRVVTLDLASLVAGTKYRGQFEERMKAVMNELEKNNDIILFIDEIHTIVGA GGATGSLDASNMFKPALARGEIQCIGATTLDEYRQYIEKDGALERRFQKVIVEPTSVEETITILHNIKDKYEDHHNVTYT DEAIEACVKLTDRYMSERFLPDKAIDALDEAGSRVHITNIDVPKKILELERQLEEVRELKNSVVKRQKYEEAAKLRDDEK KLEKDLAIAQEEWDDDAKNNKIIVSEDNVADVVSMMTGIPVNRIAQTESNKLAHLPELIQNKVIGQNEAVLKIARAIQRN RAGLKDPNKPIGSFIFLGQTGVGKTQLAKILAKELFDSEDALVRIDMSEYMEKFAVSRLVGAPPGYVGYEEGGQLTEKVR RKPYCVVLLDEIEKAHPDVFNMMLQVLDDGYMTDSLGRKIDFKNTIIIMTSNVGARQLKDFGQGVGFGTAAKVSQADDNS KSIIENALKKTFAPEFLNRIDDVIVFNALEKEDINSIIEIELNKLYARVKELGYSLSLSDKAKAYVAEKGFDRQFGARPL KRAIQKYVEDVLAEEIITSKIASGDEIFMDFEEGETELKVSIRKKTEEPTS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 3e-178 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpA | YP_001295666.1 | ATPase with chaperone activity ATP-binding subunit | VFG0080 | Protein | 7e-148 | 51 |
| clpA | YP_001295666.1 | ATPase with chaperone activity ATP-binding subunit | VFG0079 | Protein | 0.0 | 49 |
