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Name : gspE (FP2300) Accession : YP_001297156.1 Strain : Flavobacterium psychrophilum JIP02/86 Genome accession: NC_009613 Putative virulence/resistance : Virulence Product : Putative bacterial general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2642009 - 2643412 bp Length : 1404 bp Strand : - Note : - DNA sequence : ATGAGTGACTTTTCCCTACCCGTAGAATTATCACAACTGATAAAAACGGAACAAGCGTATCATTACAGAATAATACCAAC TAAAAAATTAGGCACTTCTATTGTATTAAAAACTGACAATAGTAATATATCTAGTTTACAATCAGAATTAACTATTTTAC TAGGTTTTCCTACACAATTAGAAGTTGATACCACCGAAAACATCAACAAATATCTAACTACTAATTATAGAAAATCTGCT TCAAATACGGTTTCAGAGATTCATTATTCGAATGATTTTCTGGAAAAAATATTGGTTAATGCAAAAGAAATAGAAAGTAG TGATATTCACTTCGAACCTTTTGAGAAAATGGCTCGTGTTCGTTTTAGAATTGACGGAAAACTAAAGGAACAATTTCACA TTCCTACCGACGAATATCCTATCATTATCAACAAAATAAAAATTAGAGCACAGCTTGATATTTCTGAAAAACGGTTGCCA CAAGATGGACGTATTACGGTCGTAACCGATTATGAAGATTTTGACATTCGTGTTTCGGTTTTACCAGCTTTGCACGGCGA AAAAGTGGTTTTGCGTATTTTAAGCAAGGATACCAGCCATATTGATATTAATTCACTAGGTTTTTCCGATGATGAAATAA AAACATATCTCGAAAATATTAAAAAACCCAATGGTATTGTTTTAATTTCTGGCCCTACTGGATCAGGAAAAACAACCACT TTATACGCCACCCTTAAAAAATTAAATCTTCCTAATATTAACATTCTTACGGTTGAAGATCCTATCGAATATACTTTGGA AGGAATTACTCAAGTACAATTGAGAGAAAATATTGGTCTTGATTTTGCTACTACACTCCGTACTTTTTTAAGACAAGATC CTGATATTATTATGGTGGGGGAAATACGAGATGTAAATACAGCGAATATGGCCATTAGAGCCGCATTGACTGGACATCTT GTTTTGTCAACGATACATACCAATTCAGCTTGGGCAACTGTTTCTAGATTGATTGACATGGGCATTCCTTCGTTTCTAAT AGCCAGTACACTCAACATTAGCGTGGCGCAACGTTTGGTTAGAAAATTATGCAATGATTGTAAAACAAAAAAGACAATTG AGACGGAATTATTTCCCTCTGGATTTGAGATTCCTGAAAGTTTGCAATTTCACTACACAGCAACAGGTTGTGAGCATTGT TATCATACGGGCTATTCAGGAAGAAAAGCGATTTATGAAATTCTTCCTATTGACAGTGAACTTTCTACATTGATTAAAAA TAACCAACTTTCTATTGATGATTATATCGAAGATAAAGACATTATCACTTTGAAAAAAAATGCACTGAACCTTATAAAAG ATGGAATAACATCTGTAGAAGAAGTTTTTTCTTTACTTATGTAA Protein sequence : MSDFSLPVELSQLIKTEQAYHYRIIPTKKLGTSIVLKTDNSNISSLQSELTILLGFPTQLEVDTTENINKYLTTNYRKSA SNTVSEIHYSNDFLEKILVNAKEIESSDIHFEPFEKMARVRFRIDGKLKEQFHIPTDEYPIIINKIKIRAQLDISEKRLP QDGRITVVTDYEDFDIRVSVLPALHGEKVVLRILSKDTSHIDINSLGFSDDEIKTYLENIKKPNGIVLISGPTGSGKTTT LYATLKKLNLPNINILTVEDPIEYTLEGITQVQLRENIGLDFATTLRTFLRQDPDIIMVGEIRDVNTANMAIRAALTGHL VLSTIHTNSAWATVSRLIDMGIPSFLIASTLNISVAQRLVRKLCNDCKTKKTIETELFPSGFEIPESLQFHYTATGCEHC YHTGYSGRKAIYEILPIDSELSTLIKNNQLSIDDYIEDKDIITLKKNALNLIKDGITSVEEVFSLLM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-70 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-70 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | YP_001297156.1 | Putative bacterial general secretion pathway protein E | VFG1876 | Protein | 2e-73 | 47 |
| gspE | YP_001297156.1 | Putative bacterial general secretion pathway protein E | VFG0182 | Protein | 7e-73 | 46 |
| gspE | YP_001297156.1 | Putative bacterial general secretion pathway protein E | VFG2048 | Protein | 4e-70 | 44 |
| gspE | YP_001297156.1 | Putative bacterial general secretion pathway protein E | VFG2426 | Protein | 1e-67 | 43 |
