Gene Information

Name : FP1297 (FP1297)
Accession : YP_001296191.1
Strain : Flavobacterium psychrophilum JIP02/86
Genome accession: NC_009613
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase family protein probably involved in polysaccharide biosynthesis
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : 5.1.3.-
Position : 2414658 - 2415638 bp
Length : 981 bp
Strand : -
Note : -

DNA sequence : 
ATGCAACAATCAAAATTTAAAATACTTATAACAGGTGGAGCAGGATTTATAGGCTCTAATTTGTCTGAATATTTTCTTGA
TAAAGGGCATGAAGTCGTTTGTTTAGATAATTTTGTAACGGGGCATCGTTATAATATCGAGCATTTGCTGGCTAATAAAA
ATTATAGTTTAATAGAAGGAGATATTCGCAATCTTTCAGATTGTCAGAAAGCTTTAATAGGTGTCGATTATGTATTGCAT
CAAGCAGCGTTAGGCTCTGTTCCAAGATCTATTTCAGATCCAATTACAACTAACGAGGTTAATGTTTCTGGATTTCTAAA
CATGTTGTCTGCTGCAAAAGAGGCAAAGGTAAAACGATTTATATACGCTGCAAGTTCATCGACTTACGGAGATTCTGAAT
CGTTGCCTAAAGTAGAAAACGTTATAGGAAAACCACTTTCGCCCTACGCTATTACAAAGTATATAAACGAATTGTATGCC
GACATTTTTAGTAAAACTTACGCAATAGAAACCATAGGATTAAGATATTTTAACGTTTTTGGAAGAAAACAAGATCCCAA
AGGTGCTTATGCCGCAGTAATTCCTAAATTTGTGCAACAGTTTATAAATTATGAAAATCCAGTGATAAACGGAGACGGAA
ATTATTCGCGCGATTTTACCTATATAGACAATGTAATTCAAATGAACGAATTGGCAATGTTTACTCAAAATCCAGAAGCT
GTAAACACAGTTTACAATACAGCTTTTGGCGATAGCACCACATTAAACGATTTGGTAAAAAAACTGCAATTCGAATTGTC
TCAATTTGACCCTAAAATTGCAAATGTAAACATAATTTACGGGCCAAATCGTGCAGGAGACATTCCGCATTCGTTGGCAA
GTATAGATAAAGCAAAAAAACTGCTAGGCTACAACCCAAAATTCTCTATGCAAGAAGGTTTGAAACAATCTGTAAAGTGG
TATTGGGAGCATTTAAAATAG

Protein sequence : 
MQQSKFKILITGGAGFIGSNLSEYFLDKGHEVVCLDNFVTGHRYNIEHLLANKNYSLIEGDIRNLSDCQKALIGVDYVLH
QAALGSVPRSISDPITTNEVNVSGFLNMLSAAKEAKVKRFIYAASSSTYGDSESLPKVENVIGKPLSPYAITKYINELYA
DIFSKTYAIETIGLRYFNVFGRKQDPKGAYAAVIPKFVQQFINYENPVINGDGNYSRDFTYIDNVIQMNELAMFTQNPEA
VNTVYNTAFGDSTTLNDLVKKLQFELSQFDPKIANVNIIYGPNRAGDIPHSLASIDKAKKLLGYNPKFSMQEGLKQSVKW
YWEHLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 8e-75 54
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 8e-75 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FP1297 YP_001296191.1 NAD-dependent epimerase/dehydratase family protein probably involved in polysaccharide biosynthesis VFG0430 Protein 3e-75 54