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Name : lysS (FP1202) Accession : YP_001296096.1 Strain : Flavobacterium psychrophilum JIP02/86 Genome accession: NC_009613 Putative virulence/resistance : Virulence Product : Lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2315223 - 2316914 bp Length : 1692 bp Strand : + Note : - DNA sequence : ATGCAACTTTCCGAACAAGAAATCATTAGAAGAGAAAAACTGAACGCTTTGCGCCAACTAGGAATTAACCCTTATCCTGC AGATTTATTTCCTGTAAATCATACTTCGAAACAGGTTAAAGAAAGTTTTGAAGAAGGCAAAAAGGTGACTCTTGCCGGAC GATTAATGAGCGTGAGAGACCAAGGAAAAGCTTCTTTTGCTGAATTGCAGGATAGCCAAGGTAGAGTTCAATTGTATTTT AACCGTGATGTAATTTGCGAAGGCGATGACAAAACGTTGTACAATCAGGTTTTTAAAAAATTGACCGATTTAGGTGATTT TATTGGTGTAGAAGGTGAATTATTTACTACACAAGTAGGTGCAAAATGTATTCGTGTTTCTAATTTTACTTTTTTAAGTA AAACTTTACGCCCGCTACCGTTGCCAAAAACTGATGAAGAAGGTAATATTCACGATGCGTTTAACGATCCTGAATTAAGA TACAGAATGCGTTATGTAGATCTTGTGGTTAATCCGCAAGTGAAAGAAGTTTTTGTAAAAAGAACAAAATTGTTTACTGC CATGCGAAACTTTTTTAACGAAAGTGGGTATATGGAAGTAGAAACTCCCGTTTTGCAATCTATTGCTGGTGGTGCAGCGG CCCGCCCGTTTATCACCCACCATAATAGTTTAGATATGCCTTTGTACATGCGTATTGCAAACGAATTATACTTAAAAAGA CTAATTGTAGGTGGTTTTGATGGGGTTTATGAGTTTTCGAAAAACTTTCGTAATGAAGGAATGGACAGAACGCACAATCC AGAATTTACCGCTATGGAAATTTATGTAGCCTACAAAGACTATAATTGGATGATGACTTTTGCCGAAAATTTATTAGACC ATTGCGCTACTGCTGTAAATGGAAGTAGCGAAGTAACTTTTGGCGAGCATAAAATAAGTTTCAAAGCACCCTATGCTCGT GTAACTATGACACAGGCTATTATAGATTTTACTGGTTTTGATATTTCTGGAAAAAGCGAAGCAGAACTTTTTGCTGCCGC AAGAAACATGGGTATTGAGGTAAATGAAACCATGGGTAAAGGAAAACTAATTGATGAAATTTTTGGAGCCAAATGCGAAG GAAATTACATTCAACCAACCTTTATTACCGATTATCCGAAGGAAATGTCGCCGTTATGCAAATCGCATCGTGACAATCCA GACTTGACAGAACGTTTTGAACTAATGGTTTGCGGTAAAGAAATTGCCAATGCGTATTCTGAATTAAACGACCCGATAGA CCAACGGGAACGTTTCGAACACCAACTAAAACTTTCCGAAAAAGGTGATGACGAAGCCAATGGTGTTATTGATGAGGATT TTCTTCGTGCTTTAGAATACGGAATGCCGCCAACCTCTGGAATGGGAATTGGCATGGACAGACTAATTATGTTCCTGACT AATAATGCTTCTATACAAGAAGTATTGTTTTTCCCTCAAATGCGACCTGAGAAAAAACAATTGGAATTAACAGATGACGA AAAACACATTGTTGAAGTTTTGAAAGCTAACGAAGGAATTTCTATTTCTGATTTGAAAGAAAAAGCCGCTTTGAGTGGCA AAAAATGGGATGCGGCCAGCAAAGGAATTACCAAACATGGATTAATGAAAATAGTAGTAGATGGCGATCGTAAAATTGCG GTTCTAAATTAG Protein sequence : MQLSEQEIIRREKLNALRQLGINPYPADLFPVNHTSKQVKESFEEGKKVTLAGRLMSVRDQGKASFAELQDSQGRVQLYF NRDVICEGDDKTLYNQVFKKLTDLGDFIGVEGELFTTQVGAKCIRVSNFTFLSKTLRPLPLPKTDEEGNIHDAFNDPELR YRMRYVDLVVNPQVKEVFVKRTKLFTAMRNFFNESGYMEVETPVLQSIAGGAAARPFITHHNSLDMPLYMRIANELYLKR LIVGGFDGVYEFSKNFRNEGMDRTHNPEFTAMEIYVAYKDYNWMMTFAENLLDHCATAVNGSSEVTFGEHKISFKAPYAR VTMTQAIIDFTGFDISGKSEAELFAAARNMGIEVNETMGKGKLIDEIFGAKCEGNYIQPTFITDYPKEMSPLCKSHRDNP DLTERFELMVCGKEIANAYSELNDPIDQRERFEHQLKLSEKGDDEANGVIDEDFLRALEYGMPPTSGMGIGMDRLIMFLT NNASIQEVLFFPQMRPEKKQLELTDDEKHIVEVLKANEGISISDLKEKAALSGKKWDAASKGITKHGLMKIVVDGDRKIA VLN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-98 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001296096.1 | Lysine--tRNA ligase | VFG1668 | Protein | 3e-98 | 44 |
