|
Name : CGSHiEE_04165 (CGSHiEE_04165) Accession : YP_001290621.1 Strain : Haemophilus influenzae PittEE Genome accession: NC_009566 Putative virulence/resistance : Unknown Product : putative type I restriction enzyme HindVIIP R protein Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 860295 - 863480 bp Length : 3186 bp Strand : - Note : - DNA sequence : ATGATGGAGAACAATAAAATGCTCAACGAAAACGACATAGAACAACTCACTCTTCAGCGCCTGCAATCCCTCGGTTGGGA ATATCGCTATGGTAAAGACTTGCCTGTTCATGAGGGCAAGTTTGCCCGTGGCGATTTGAGCGGCGTAGTCTTTGTTGAGC AACTGCGTGAGGCGGTGCGTAAACTTAATCCTCAGCTGCCTGAAAGTGCGGTTGATTCTGTAGTGAAATCGGCAACGAAA AGCGATATTGGCGACTTGGTTGTGCGTAATCAGACGTTTTATAAACTGCTGCGTGATGGCGTGCGGGTCGAATATACGCA AAACGGCGAACAGAAAATTGAGATGGTGCGTTTGGTGGATTTCGAGCATTGGGGAAACAACCGTTTTGTCGCCGTCAATC AGCTGGAAATCCGCAGCCGTAAAGGGGGCAAGCGGATTCCCGATATTATCGGCTTTGTAAATGGCTTACCGTTGGTGGTA TTTGAGCTCAAAAATCCACTACGTGAATCGGCGGATTTGTTGCAAGCGTTTAATCAGTTTGAAACCTATAAAGATGAAAT TGCCGAGCTGTTTGTTTACAACCAAGCTCTGATTATTTCAGACGGCATTGTCGCCCGTTTGGGTTCGCTTTCGGCAGATT TCCAACGCTTTACGCCGTGGAAAGTGGTCGATGAAAAAAATAAAAGCGCGCGGTTATATTTTGACGATGAGTTGCAAAGC CTGCTTAATGGCCTGTTGCAGCCTAAGGATTTACTCGACTATATCCGCTATTTCGTCTTGTTTGAACGGGATTCCGTTGG CAAAACCATTAAAAAAATCGCGGCGTACCATCAATATTACGGCGTAAATGAAGCGGTAGAACCCACGATTTTTGCCACAA GCGAGCAAGGCGATAAACGCATTGGTGTGATGTGGCATACGCAGGGTTCGGGCAAGTCGATTTCGATGCTGTTTTATGCA GGCAAACTGCTTGCACAGCCTGAATTGAAAAATCCTACCATTGTAGTGGTTACCGACCGCAACGATTTAGACGGTCAGCT CTTCCAAACCTTTTCTTCAGGCAAAGATTTAATCAAGCAAACACCGCAACAAGTGGAAGACCGTGATCAACTGCGCCAAC TGCTCGCACAAAATGAAGTCGGCGACGTATTTTTTACCACGATTCAGAAATTCGCCCTAAATGAGGAAGAAAGCCGCTTC CCTATTTTAAATGAGCGCAACAATATTATTGTGATCAGCGATGAGGCTCACCGCAGCCAATATGGCTTTACGCAAAAGCT GCATAACGGCAAGTTTCAGACAGGTTATGCTCGCCATTTGCGTGATGCTTTACCTAATGCCTCGTTTATTGGTTTTACAG GTACGCCAATTAGCCTTGAAGATAAGGACACGCAAGATGTGTTCGGTCGTTATGTGTCCATTTATGACTTGCAAGATGCG GTGGAAGATGGTGCAACTGTGCCGATTGTGTATGAAGCACGCCAAATCAAGCTAGCGGAGAATGCTAATCACGATGAATT ATTTGCAGAAATTGATGAACTGCTGGAAGGCGAAGAAAACCCGAAATTACGCTTGCGAGAAAAATTGTTCGGCTCAGAAG CACGATTGCATGATTTAGCGATCGATTTTGTGCAACATTTTGCAAAACGCAATGAAGTGGTTGACAGCAAAGCGATGATG GTGGTTTCCAGCCGTCAGATTTGCGTGGACTTATACAATGAAATCATCAAATTGCGCCCTGAATGGCATTCGGACAATAT CAACGAAGGGGCGATTAAAATTGTGATGACAGGTTCTGCTTCCGATGCGTCTGAAATGCAGAAACACGTTTACAGTAAGC AGGAAAAACAAACGCTAGAACGCCGCTTTAAAGACCCGAACGATCCGCTGAAGGTGGTGATTGTGCGTGATATGTGGCTG ACAGGCTTTGATGCACCGTGCTGTAACACTATGTATCTTGATAAGCCAATGAAGGGGCATAACCTAATGCAAGCCATCGC ACGAGTAAACCGTGTATTCCGCAATAAAAGCCGAGAAAATGGCGGCTTGATTGTGGATTATGTAGGCATTGCTGACGAGC TCGAAAAAGCCACTCGGCAATATACAAACTCACAAGGCAAGGGCAAACTGGCTGATAGCGTGATTGATGTATTCTTTAAA ATGAAAGAGCATTTAGAAGTTATCCGCAGCCTGTTTGCAACGCCAGTTGAGGGGAAAACCTTTGATGTTCAGACGGTCTT AGAAAAAGATAATCCGAATGATCTTTTGATGGCGATTCGTTTTGCCGCCAACCATATTTTAAGCCTTGATCAATTATCGT TTGATGGCAAAGCGCACGAGCAGCATTGGTTTAATAAAAAAGAAACCGAACCACGCAAAAAAGCCTTTTTGAAAGCGGCA GGCTTGGTAAAAAAAGGCTATATGCTGTGCGGCACATTGGCTGAAGTTGAGCCGTATAACCAAGAAATCGCCTTTTATGA TGCCGTACGGGCAATTTTAACTAAACGTGAACAAAAAGGCACAGGCACAAATGAAAGACAGATTTTATTGAAAAAATTGG TTAATCAAACTGTGTATTCTGAAGGCGTGATTGATTTATTTGATCTGCTAGAAAAACCACAACCACAAATTAGCTTGCTT TCCGAGGAATTTTTACAAACTGTAAAAAATAGCCCGACTAAAAATTTATGGGTTACGGCAATGGAACGTTATTTAGCAAG TGAAATTAAAGTTAAATCAGGCACAAACTTAACATTGCAAAAAGATTTTGAACGGCGTTTGAAGGAAGCATTGAATCAAT ACCACAATCACAATTTGACTGTGGTAGAGATTTTGGACGAACTCTTTAAAATGAGCCAAGATTTCCAAGAACGTTTAGCA TTAGGGAAAAAACTAGGATTAACCAAGGAAGAACTAGCCTTCTATGAAGCTCTATCTCAAAATCAAAGTGCAAAAGATTT GATGGGTGATGAAGTGCTTTCTAAACTGGCGAAAGAAATCACGGAAACACTTAGAAAATCGGTCACAATCGACTGGCAGT ACAAAGAAGCGGTGCGGGCAAAAATGCGTATTCTCGTTAAACGCGCACTACAACGCTACAAATATCCACCCGATAAACAG GAAGAAGCGATAACTTATGTGATTAAACAAGCTGAAGAAATTGCTGAGGATTTAACTGGTTTATAA Protein sequence : MMENNKMLNENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPESAVDSVVKSATK SDIGDLVVRNQTFYKLLRDGVRVEYTQNGEQKIEMVRLVDFEHWGNNRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVV FELKNPLRESADLLQAFNQFETYKDEIAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQS LLNGLLQPKDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVEPTIFATSEQGDKRIGVMWHTQGSGKSISMLFYA GKLLAQPELKNPTIVVVTDRNDLDGQLFQTFSSGKDLIKQTPQQVEDRDQLRQLLAQNEVGDVFFTTIQKFALNEEESRF PILNERNNIIVISDEAHRSQYGFTQKLHNGKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQDA VEDGATVPIVYEARQIKLAENANHDELFAEIDELLEGEENPKLRLREKLFGSEARLHDLAIDFVQHFAKRNEVVDSKAMM VVSSRQICVDLYNEIIKLRPEWHSDNINEGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWL TGFDAPCCNTMYLDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQGKGKLADSVIDVFFK MKEHLEVIRSLFATPVEGKTFDVQTVLEKDNPNDLLMAIRFAANHILSLDQLSFDGKAHEQHWFNKKETEPRKKAFLKAA GLVKKGYMLCGTLAEVEPYNQEIAFYDAVRAILTKREQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQISLL SEEFLQTVKNSPTKNLWVTAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHNHNLTVVEILDELFKMSQDFQERLA LGKKLGLTKEELAFYEALSQNQSAKDLMGDEVLSKLAKEITETLRKSVTIDWQYKEAVRAKMRILVKRALQRYKYPPDKQ EEAITYVIKQAEEIAEDLTGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 48 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 42 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 42 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 42 |
