|
Name : smpB (CGSHiEE_07060) Accession : YP_001291124.1 Strain : Haemophilus influenzae PittEE Genome accession: NC_009566 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1407575 - 1408060 bp Length : 486 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGACAAAGAAAAAAGTAAAACCCAATTCAAATACTATCGCACTGAATAAACGTGCAAGACACGATTATTTTATTGAAGA TGAAATTGAAGCAGGTCTTGAATTACAAGGCTGGGAAGTTAAATCTATGCGCGCAGGCAAGGCAAATATTAGTGATAGTT ATGTTATTTTTAAAAATGGCGAAGCCTTTTTATTCGGTGCAAGCATTCAGCCATTAAATGTTGCATCAACGCATATTGTT TGTGATCCAACTCGCACTCGTAAGTTATTGTTAAATAAACGCGAATTAGCATCCCTATTTGGCAAAGCAAACCGAGACGG TTTTACCATAGTTGCACTTTCTCTTTACTGGAAAAGTGCGTGGGCAAAAGTCAAAATTGGTTTAGCCAAAGGTAAAAAAC AACAGGATAAACGTGATGATATTAAAGAACGTGAATGGAAAGTAACAAAAGATCGCATTATGAAAAATGCACATCGAAGA TCTTAA Protein sequence : MTKKKVKPNSNTIALNKRARHDYFIEDEIEAGLELQGWEVKSMRAGKANISDSYVIFKNGEAFLFGASIQPLNVASTHIV CDPTRTRKLLLNKRELASLFGKANRDGFTIVALSLYWKSAWAKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKNAHRR S |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 4e-50 | 67 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 6e-24 | 49 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 2e-18 | 42 |
