Gene Information

Name : PsycPRwf_0086 (PsycPRwf_0086)
Accession : YP_001278996.1
Strain : Psychrobacter sp. PRwf-1
Genome accession: NC_009524
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 105041 - 105742 bp
Length : 702 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence :
ATGAGCAGCCAAATCGATAATCCAAACAGCGATGTTAAATCTTCGCCCCTACTGACGGCACGCAACCTAAGCAAAAGCGT
GATGATCGGCGATACCAAGACCGACATCATAAAAGGTGTCGATGTGTCGATTGACGCTGGTGAGTTTGTCGTCATAATGG
GAAAATCAGGGTCAGGCAAGTCAACTTTGCTGGGGCTACTGGCAGGACTTGATTATCCAGATAGTGGAGAGATTTGGCTT
GATGGCCAAAACCTCACTACCCTAAGCGAGGATGAATTGGCACAAAAACGTCAGCAGGATATGGGATTTGTGTTTCAGTC
ATTTCATTTATTACCAACCTTAACCGTGGCTGAAAACATCGCGTTTCCGCTGGATATTGCACGTCGTCCTGACCCAGAGC
GGGTGGTGCAGTTATTGACAGCGGTCGGTCTTACCCACCGCCGTGACAGCTTACCGCATCAGCTTTCAGGTGGTGAACAG
CAGCGCACAGCACTCGCCCGCGCCCTGGTCGCCCGTCCCAAAATAATCTTCGCTGATGAGCCCACCGGTAACTTAGATGA
ACAAAATGCGCAGCAAGTGATGCACTTATTATTGGAGCTACAGCAGCAGTCTGGGACGGCCTTGGTGGTGGTGACCCATG
ACCCAGCGATGACTGAGCATGCCGATCAGGTCATTACCATTCATGATGGGCGGGTGGAATAG

Protein sequence :
MSSQIDNPNSDVKSSPLLTARNLSKSVMIGDTKTDIIKGVDVSIDAGEFVVIMGKSGSGKSTLLGLLAGLDYPDSGEIWL
DGQNLTTLSEDELAQKRQQDMGFVFQSFHLLPTLTVAENIAFPLDIARRPDPERVVQLLTAVGLTHRRDSLPHQLSGGEQ
QRTALARALVARPKIIFADEPTGNLDEQNAQQVMHLLLELQQQSGTALVVVTHDPAMTEHADQVITIHDGRVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-29 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-31 46
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-31 46
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-31 46
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-27 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PsycPRwf_0086 YP_001278996.1 ABC transporter-like protein NC_008702.1.4606598. Protein 3e-35 51
PsycPRwf_0086 YP_001278996.1 ABC transporter-like protein NC_012469.1.7685735. Protein 2e-33 45
PsycPRwf_0086 YP_001278996.1 ABC transporter-like protein NC_012469.1.7686878. Protein 5e-37 44
PsycPRwf_0086 YP_001278996.1 ABC transporter-like protein CP001581.1.gene798.p Protein 3e-35 43
PsycPRwf_0086 YP_001278996.1 ABC transporter-like protein CP001581.1.gene598.p Protein 6e-29 42