Gene Information

Name : PsycPRwf_0731 (PsycPRwf_0731)
Accession : YP_001279634.1
Strain : Psychrobacter sp. PRwf-1
Genome accession: NC_009524
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 873596 - 874450 bp
Length : 855 bp
Strand : +
Note : PFAM: Integrase, catalytic region

DNA sequence :
ATGCAAGAGAATCGATTGAAATACTGCATACAACGTATGGCGACCGTATTTGAAGTCAGCCTATCAGGCTACTATGACTG
GCTAAAGCGAGGCATGAGCAAGCGAAAACAGCACCACAATCGCTGTGAGTTACTGGTCAAATCCGCTCATATGGATACAC
AGCAAAGCTATGGGCATGAACGCTTGCATCAGCATTTAACCAGCCAAGGACACGACATCAGCCTGTACATGGTTCGGCAA
ATCAAGCAAGAACATGGTATTTACTGCAAACGCCACAAGCGATCTAAGGTGACTACTGACTCAAATCATAATAAGCCTGT
GTATCCAAACTTGTTAGAACAGCAGTTTGACGTGGCAGCACCCAATATCGCTTGGGTTAGCGATATTACCTATATTTGGA
CCAATGAAGGCTGGGTGTACTTGGCAGCGTTCAAAGACTTGTACAGCAAAGAGATTGTGGGATATGCTCTAAATAAGCGT
ATGACCGCTGATTTGGTTTGTGAGGCTTTAAACAATGCCATTAAGTACAAACGCCCTGCTCGGGGCTTAATCGTGCATTC
TGACAGGGGTAGTCAGTATTGTAGCCATCAATACCGCCAAATCATCGACAAGTATGGTTTTGCTGGCTCTATGAGCCGAA
AAGGCAATTGCTACGATAACGCCCCGATTGAAAGCTTCTGGGGTCAGTTAAAAAACGAGCTGATTTATCACAAAGTCTAT
GAGACTCGTGATGAAGCCATTAAGGATGTGGTTAGATATATTGAGATTTTTTACAACCGTCAACGAATACAAAAAGGGTT
AGGATTTAAGTCACCTACTCAAGTATTCCAAGACTTTTACCGTCAGGCTGCCTGA

Protein sequence :
MQENRLKYCIQRMATVFEVSLSGYYDWLKRGMSKRKQHHNRCELLVKSAHMDTQQSYGHERLHQHLTSQGHDISLYMVRQ
IKQEHGIYCKRHKRSKVTTDSNHNKPVYPNLLEQQFDVAAPNIAWVSDITYIWTNEGWVYLAAFKDLYSKEIVGYALNKR
MTADLVCEALNNAIKYKRPARGLIVHSDRGSQYCSHQYRQIIDKYGFAGSMSRKGNCYDNAPIESFWGQLKNELIYHKVY
ETRDEAIKDVVRYIEIFYNRQRIQKGLGFKSPTQVFQDFYRQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09030.1 unknown Not tested SHI-O Protein 9e-61 51
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 9e-61 51
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 8e-61 51
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-60 51
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-60 51
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 1e-60 51
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 4e-59 50
unnamed AAF09022.1 unknown Not tested SHI-O Protein 6e-60 50
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 1e-60 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PsycPRwf_0731 YP_001279634.1 integrase catalytic subunit VFG1706 Protein 4e-61 51