Gene Information

Name : PsycPRwf_0249 (PsycPRwf_0249)
Accession : YP_001279154.1
Strain : Psychrobacter sp. PRwf-1
Genome accession: NC_009524
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 289427 - 290713 bp
Length : 1287 bp
Strand : -
Note : PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like

DNA sequence : 
ATGTTAAATGTTAACGACATAAAAATTGCAGTAATCGGCTTGGGCTATGTGGGTCTACCCTTAGCCGTTGAGTTTGGTAA
AAAGAATCCAGTTATCGGCTTTGATATCAATCAACATCGAATTGAAGAGCTAAAATCAGGAACAGATCATACCTTAGAGG
TCAGTGATGAAGAGCTCGCCATTGCTAAGCAATTACAGTTTAGCTCAGACATCAATGAGCTGGCTGAATGTAACTTTTAT
ATTGTCACTGTGCCTACGCCTATCGATGAGTACAAACAGCCTGACTTAACGCCTCTAATTAAGGCTTCTGCTGCCATTGG
TAGGGTGCTTAAAGCAGGCGACATCGTAGTATATGAGTCGACTGTATATCCTGGTGCTACTGAAGAGGTTTGTATCCCAG
AGCTAGAGCGAAGCTCGGGTCTAATTTTTAATAAAGACTTCTTTGCTGGCTATAGTCCAGAGCGCATTAACCCAGGTGAT
AAAGAACACCGCGTTACTAACATTCTTAAAGTCACAGCAGGCTCTACTCCCGAAGTAGCAGATCTAGTAGATGATGTTTA
TAACTTGGTCATTACAGCCGGCACTCATAAAGCACCTTCTATCAGGGTAGCTGAAGCAGCTAAAGTTATTGAAAACACTC
AGCGTGATGTCAATATTGCTTTAATCAATGAATTAGCCGTTATCTTTAATAAAATGGGCATTGATACTGAGGCAGTCTTA
ACTGCAGCAGGAACTAAATGGAATTTTTTGCCCTTCCGTCCAGGTCTAGTCGGTGGGCATTGTATCGGAGTTGACCCTTA
CTACCTCACTCATAAAGCTCAGGCCATTGGTTACAACCCGGAGATTATTCTAGCTGGTCGCCGCTTGAATGACAGTATGG
GCGAATATGTGGTGACTCAGTTAGTCAAAACTATGATTAAAAAGCGTATCCAAGTTGAAGGCGCTAAAGTTTTAATACTA
GGTTTAAGCTTCAAAGAAAACTGTCCTGATGTGCGTAATACTAAAGTGATTGATATTGTGCATGAGCTAAAAGAATATAA
CATCGATGTTGATGTGTACGACCCTTGGGTGGATGCTGATGAAGCTAAACAAGAATATGGCATTATCCCTATCAATGATA
TTACAAACTTAGAGAGTAATAGCTACGATGGCATTATCTTAGCCGTGGCTCACGATCAGTTCGTAGAAATGGGCGTAGAG
CAAATTAGAGCTCTCGGTAAATCTAGTCATGTACTTTATGACTTAAAATACCTATTCAATAGTGAGCTGAGCGATATTCG
TTTATAA

Protein sequence : 
MLNVNDIKIAVIGLGYVGLPLAVEFGKKNPVIGFDINQHRIEELKSGTDHTLEVSDEELAIAKQLQFSSDINELAECNFY
IVTVPTPIDEYKQPDLTPLIKASAAIGRVLKAGDIVVYESTVYPGATEEVCIPELERSSGLIFNKDFFAGYSPERINPGD
KEHRVTNILKVTAGSTPEVADLVDDVYNLVITAGTHKAPSIRVAEAAKVIENTQRDVNIALINELAVIFNKMGIDTEAVL
TAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQAIGYNPEIILAGRRLNDSMGEYVVTQLVKTMIKKRIQVEGAKVLIL
GLSFKENCPDVRNTKVIDIVHELKEYNIDVDVYDPWVDADEAKQEYGIIPINDITNLESNSYDGIILAVAHDQFVEMGVE
QIRALGKSSHVLYDLKYLFNSELSDIRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-149 68
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-149 68
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 6e-113 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PsycPRwf_0249 YP_001279154.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 5e-150 68