Gene Information

Name : PsycPRwf_0248 (PsycPRwf_0248)
Accession : YP_001279153.1
Strain : Psychrobacter sp. PRwf-1
Genome accession: NC_009524
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 288338 - 289360 bp
Length : 1023 bp
Strand : -
Note : PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain

DNA sequence : 
ATGACCCAATACCAGAAGATTCAACAAGACTTAGTTGCTGCCCCTAAAACCTGGCTTATCACAGGCGTGGCAGGTTTTAT
TGGCTCAAATTTGCTTGAGACCTTATTAAAGCTCAATCAGACGGTGGTGGGTCTGGATAACTTCGCTACTGGCTATCAGA
AAAACTTAGATGAAGTTCAAAGCTTGGTGTCCAGTGAGCAGTGGAAGCGTTTTAGCTTCATCAAGGGTGATATTCGTAAT
TTTGTAGACTGCCAGAAGGCCTGTACAGGCGTTGACTATGTGCTACATCAAGCTGCACTTGGCTCAGTACCTCGCTCCCT
TGCGGACCCTATCACCACCAATGAAGTTAATATCTCAGGCTTCTTGAACATGCTAACCGCAGCCCGTGATGCAGAAGTTA
AAAGCTTTACCTATGCCGCCAGTAGTTCAACTTATGGTGACCACCCTGGCCTACCTAAGGTAGAAGACAAAATTGGTAAG
CCGTTATCTCCTTATGCGGTCACTAAATATGTAAACGAGCTATATGCCGATGTATTCGCTCGCTCTTATGGATTTAAGAG
TGTTGGTTTACGCTACTTTAACGTCTTCGGTCGTCGCCAAGATCCAGATGGCGCCTATGCTGCAGTAGTCCCGAAGTGGA
CTGCTGCCATGATCAAAAACGATACGGTATTTATCAATGGGGATGGTGATACCAGCCGTGACTTCTGCTATATCGAAAAT
ACGGTACAAGCTAATATTTTAGCCGCAACTACTCAAAGTAACGAGGCAACCAATCAAGTATATAATGTAGCTGTTGGTGA
TCGTACTACGTTAAACGAGCTGTTTAATGCTATTAAATCTGCATTGGCAGATAACGGTGTGAGCTATGAGCAGGAGCCGA
CTTATCGCGACTTTAGACCCGGTGATGTACGTCACAGTCAAGCGAATGTCAGTAAAGCAAAGAATTTGTTAGGCTATGAG
CCAAAGTTCAATATCTCTCAAGGCATTGATGAGGCGATGGCATGGTATGTTAATAACGGGTAA

Protein sequence : 
MTQYQKIQQDLVAAPKTWLITGVAGFIGSNLLETLLKLNQTVVGLDNFATGYQKNLDEVQSLVSSEQWKRFSFIKGDIRN
FVDCQKACTGVDYVLHQAALGSVPRSLADPITTNEVNISGFLNMLTAARDAEVKSFTYAASSSTYGDHPGLPKVEDKIGK
PLSPYAVTKYVNELYADVFARSYGFKSVGLRYFNVFGRRQDPDGAYAAVVPKWTAAMIKNDTVFINGDGDTSRDFCYIEN
TVQANILAATTQSNEATNQVYNVAVGDRTTLNELFNAIKSALADNGVSYEQEPTYRDFRPGDVRHSQANVSKAKNLLGYE
PKFNISQGIDEAMAWYVNNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 9e-119 68
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 9e-119 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PsycPRwf_0248 YP_001279153.1 NAD-dependent epimerase/dehydratase VFG0430 Protein 4e-119 68