Gene Information

Name : PsycPRwf_0234 (PsycPRwf_0234)
Accession : YP_001279142.1
Strain : Psychrobacter sp. PRwf-1
Genome accession: NC_009524
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 275990 - 276577 bp
Length : 588 bp
Strand : -
Note : PFAM: Integrase, catalytic region

DNA sequence :
GTGATACTTAAAGCCCTTATCAGGCAAGTGTTTACACAATCAGGGGGCTCAGCAGGTGCAAGAACGGTATCAGCTATTGT
CACCATGCAACAAGGTATCAAACTAACACGCTACAGGGCAGGTAAGCTTATGAAACAAATGGGGCTGGTTAGTCGGCAAA
TAAAATCACATAAGTACAAGCACAGTGATATCGCTCATAAGGTGCATGGCAATGTTCTTGACCGTCAGTTTGCGCCTACT
GCACCAAATCAAGTGTGGACAGGTGATGTGACGTATATTCGCATCAAGGGCGGTTGGTGCTATCTAGCCGTTGTCATGGA
TTTATATGCTAGACGCATTGTGGGTTTTAAGCTGTCGGACAGTCCAAACACTGAGTTGACCACATCCGCTTTACAGATGG
CGTATCACACGAGACTGGAGCCTAAAGGGGTGTTGTTTCATTCTGATCAGGGTAGTCATTATACCAGTGAGAGCTATGCT
AAATGTGTGGCGCAATGCAATGGGATGACACATAGCATGAGCCGTAAGGGAAACTGTTGGGATAATGCCCCCACAGAGCG
GTTCTTTAGAAGCTTTAAGACAGAGTGA

Protein sequence :
MILKALIRQVFTQSGGSAGARTVSAIVTMQQGIKLTRYRAGKLMKQMGLVSRQIKSHKYKHSDIAHKVHGNVLDRQFAPT
APNQVWTGDVTYIRIKGGWCYLAVVMDLYARRIVGFKLSDSPNTELTTSALQMAYHTRLEPKGVLFHSDQGSHYTSESYA
KCVAQCNGMTHSMSRKGNCWDNAPTERFFRSFKTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAI43898.1 putative transposase Not tested LEE Protein 5e-43 54
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 5e-43 54
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 9e-38 54
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 9e-38 54
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 7e-47 53
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 2e-40 53
unnamed AAC31485.1 L0006 Not tested LEE Protein 2e-40 53
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 8e-42 53
Z5089 NP_290241.1 transposase Not tested LEE Protein 1e-41 53
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 8e-36 44
tnpB CAB61574.1 transposase B Not tested HPI Protein 4e-36 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PsycPRwf_0234 YP_001279142.1 integrase catalytic subunit VFG1484 Protein 4e-38 54
PsycPRwf_0234 YP_001279142.1 integrase catalytic subunit VFG0785 Protein 3e-42 53