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Name : lysS (PsycPRwf_1456) Accession : YP_001280351.1 Strain : Psychrobacter sp. PRwf-1 Genome accession: NC_009524 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1785232 - 1786764 bp Length : 1533 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTAACCAATCAACGAACGATCAAGATCAAATTCCATCAGCAGAAGATACCAATGACCTGATTGCTCAGCGCCAAGC CAAACTTGACGAGATCAGCGCTGCTGGCAAAATCGCTTATCCGAATCAGTTCAAGCGCACTGATTATGCTGAGGATTTAC AAAAACAGTTCGAAGGCATTACAAAGCAAGAAATCGAAGAAAATGCCGCCAATGGCGGCAAAACTCAGGTGAGCATTGCC GGTCGTGTGATGCTAAACCGCGGCGCCTTTATTGTTATTCAAGACATGACAGGACGTATTCAGCTGTATGTGGCGCGCAA AGAGCTCGATGAAGACAGCCTAGCGTTAATCAAATCCCTAGATTTGGGTGATATTATTGGTGTGAGCGGCTATATTGGCC GTTCGGGTAAAGGTGATTTATACGTTCATATCGAACAAATTACTTTATTAACCAAGTCTTTACGCCCTATGCCAAATAAG TTCCATGGCCTAGCAGACACAGAAGCACGCTATCGCAACCGTCATTTAGACTTAATGACCAACGAATCTAGCCGCAATAC GTTTATGATTCGTAGCCAAGTGATTAGTGGTATCCGTAAATTCATGCTCAATGAGCGCTTTATGGAAGTTGAGACCCCAA TGATGCATCCCATTCCAGGGGGTGCTGTGGCGCGTCCATTTATCACCCATCACAATGCGTTAGATATGCCATTATATTTA CGTATTGCCCCTGAGCTGTATCTAAAGCGTTTGGTCGTGGGCGGCTTTGAGCGGGTATTTGAGATTAACCGTAGCTTCCG TAATGAAGGGGTATCTACCCGCCACAATCCTGAATTCACCATGATTGAGTTTTATCAAGCCTATGCCGATTATAAGGACT TGATGGATTTAACTGAGCGTTTATTTAACCAACTGGCGATGGATATTTTAGGGACGACTGAGCTGACCTATCAAGAAGAA ACCATCAGTCTCAAAGCACCTTTTGCTCGTTTAAGCATGACAGATGCCATTGCTCAGTATGCCGAAGGCTTCGATATGTC TAAAGTAGCGGACAGAGATTACCTAGCTGACTATGCTCAAAATGTATTAAAGCAGCAAGTCAAAGAAGGCTTCGGTATTG GTAAACTGCAAACCATTATCTTTGAAGAGACTGCTGAGCATAAGCTGCGTCAGCCGACCTTCATTACCCAGTACCCTGCT GAGACCTCACCGCTTGCACGCCGCAACGATGAGAATCCTGAGATTACTGACCGCTTTGAGTTGTTCATTGGCGGTCGTGA GATTGCCAATGGCTTTAGTGAGTTAAATGATCCAGCCGACCAAGCTGAACGCTTCCACAATCAAGTGGCCGAAAAAGACG CAGGTGATGATGAAGCGATGCATTTTGATGCAGACTATATCGAAGCCTTAGCTTATGGTCTGCCACCGACAGCGGGTGAG GGTATTGGTATCGACCGTTTGGTCATGCTATTTACAGATGCAGCCAGCATCCGTGATGTGATTTTATTCCCGCACATGCG CATCAAGCACTAA Protein sequence : MSNQSTNDQDQIPSAEDTNDLIAQRQAKLDEISAAGKIAYPNQFKRTDYAEDLQKQFEGITKQEIEENAANGGKTQVSIA GRVMLNRGAFIVIQDMTGRIQLYVARKELDEDSLALIKSLDLGDIIGVSGYIGRSGKGDLYVHIEQITLLTKSLRPMPNK FHGLADTEARYRNRHLDLMTNESSRNTFMIRSQVISGIRKFMLNERFMEVETPMMHPIPGGAVARPFITHHNALDMPLYL RIAPELYLKRLVVGGFERVFEINRSFRNEGVSTRHNPEFTMIEFYQAYADYKDLMDLTERLFNQLAMDILGTTELTYQEE TISLKAPFARLSMTDAIAQYAEGFDMSKVADRDYLADYAQNVLKQQVKEGFGIGKLQTIIFEETAEHKLRQPTFITQYPA ETSPLARRNDENPEITDRFELFIGGREIANGFSELNDPADQAERFHNQVAEKDAGDDEAMHFDADYIEALAYGLPPTAGE GIGIDRLVMLFTDAASIRDVILFPHMRIKH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-130 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001280351.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 7e-131 | 54 |
