Gene Information

Name : PsycPRwf_1165 (PsycPRwf_1165)
Accession : YP_001280064.1
Strain : Psychrobacter sp. PRwf-1
Genome accession: NC_009524
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1423690 - 1424508 bp
Length : 819 bp
Strand : -
Note : PFAM: Integrase, catalytic region

DNA sequence :
ATGTGCCGCGTGCTAAGGGTTAAGCATTCAAGTTACTACGACTGGCTGAGTCGCGATATCAGCGAGCAGCAGATACATCG
CAACCATTGTGAGCTACTCGTTAAAGCCGCTCACAGTGAAACTCATGAGCGCTATGGTGTTGAGCGTCTGCATGCGCATC
TAAGTGAGCAAGGTCATAACATCAGTCCCTACATGGTCAGAAGCATCAAAGAGGAATACAGCATCAAATGCCGTCGCCAC
AAACGCTTTAAAGTCACCACCGACTCCAATCACAACAAACTGGTCTATCCAAACGTGTTGGATCAAGAGTTTGATGCCAG
TCGCCCTAACCAAGCGTGGGCCAGTGACATCACCTATATTTGGACGCTTGAGGGCTGGTTGTATTTAGCGGGAGTCAAAG
ATTTATATACCAAAGAGCTGGTCGGCTATGCGATCAATAAGCGAATGACCGCAGATCTAGTATGCAAAGCATTGAACATG
GCCATCAAGAATAAACAACCAAGCAAAGGGCTAGTCGTTCACTCTGACAGAGGCAGTCAGTACTGTAGCCATGCTTACCA
CAAGATCATCAAGCAGCATCAGTTTACAGGTTCAATGAGCGGTAAAGGCAACTGCTTTGACAACGCACCCATAGAAAGCT
TCTGGGGCATATTGAAGAACGAGCTAGTATATCACCAAGACTATAAAACAAGGTTTGCAGCTATCAGAGATATCATTGGA
TATATTGAGTTATATTATAATCAGACTAGGATTCAAAAGGGTTTAGGCTATAAATCGCCAAGACAGGTGTGGTTTGATTA
TTATCGTCAGGCTGCGTAA

Protein sequence :
MCRVLRVKHSSYYDWLSRDISEQQIHRNHCELLVKAAHSETHERYGVERLHAHLSEQGHNISPYMVRSIKEEYSIKCRRH
KRFKVTTDSNHNKLVYPNVLDQEFDASRPNQAWASDITYIWTLEGWLYLAGVKDLYTKELVGYAINKRMTADLVCKALNM
AIKNKQPSKGLVVHSDRGSQYCSHAYHKIIKQHQFTGSMSGKGNCFDNAPIESFWGILKNELVYHQDYKTRFAAIRDIIG
YIELYYNQTRIQKGLGYKSPRQVWFDYYRQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 1e-56 47
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 9e-57 47
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 8e-57 47
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 3e-57 46
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 3e-57 46
unnamed AAF09030.1 unknown Not tested SHI-O Protein 7e-57 46
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 7e-57 46
unnamed AAF09022.1 unknown Not tested SHI-O Protein 5e-56 45
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 5e-57 45
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 3e-42 42
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-42 42
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-42 42
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-42 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 3e-42 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-42 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PsycPRwf_1165 YP_001280064.1 integrase catalytic subunit VFG1706 Protein 5e-57 47