Gene Information

Name : RoseRS_0840 (RoseRS_0840)
Accession : YP_001275204.1
Strain : Roseiflexus sp. RS-1
Genome accession: NC_009523
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1042504 - 1043463 bp
Length : 960 bp
Strand : +
Note : TIGRFAM: integron integrase; PFAM: phage integrase family protein

DNA sequence : 
ATGCCGGAGAGAAAACTGGCCGATCGCATCCGCGACGCCATCCGCCTGCGTGGCTATTCCATCCGCACCGAGAAAGCCTA
CCTCCATTGGTACGAACGCTTCGTCCGCTTCCACAAACTCCGCCACCCCGCCGCCATGGGCGCACCGGAGGTTGAAGCCT
TCCTCACCCACCTCGCTGCCTGCGAGCAGGTTTCCGCTTCCACTCAGAATCAGGCCCTTGCCGCCCTTCTGTTCCTCTAT
CAGGAAGTTCTCGCCATCCCCCTCGGCGATGTGCACGCCCTGCGCGCGAAGAAAAGCACCTACGTCCAGCCCTACCTCAG
CCATGACGAATGCCTGCGCATCCTCGCCGAATTGGACGGCACGCCTTACCTCGTCGCCTGCCTTCTCTACGGCAGCGGAC
TGCGATTGCTCGAAGCGCTGCGCCTGCGTATCCAGGACCTCGATGTTGAGAACTCCCTCATCACCGTTCGCAACACCAAG
TCCAACCGCGACCGCGTGACCTTCCTCCCAGACGAGGAGCGGTTTCTCCAACGCCTCCGCGCCCACCTGGAGGGGGTCCG
CCGCCTTTATGAGGTTCACCTTGACGTTCCGGTCTCCATGCCGCCAGCGCTGGCGCGCAAATATCCGGGAGCAGCCACCT
CCTGGGAATGGCAGTACGTCTTCCCTTCCCGTGACCTCTCCGTAGACCCCCGTACCCTTGTCGTCAAGAGGCATCACCTC
CACCCCAGCGGTGTTCAGAAGGCCATCACCGCCGCTGTCCATGCCGCAGGCATGACCAAACGCGCCACCGCCCACACCCT
GCGCGCTGCCTTCGCTCACCGGCTTAAAGAGGCCGGTTACCAGCTCGACGATATCCAACAACTCATGGGGCATGCCGACA
TTCGCACCACTCAGCATTACCTTGAAGGCCAGGCGCCTGCCTGCAAACGCTTACGCGGTCCCCTATCCTCCAGAACCTGA

Protein sequence : 
MPERKLADRIRDAIRLRGYSIRTEKAYLHWYERFVRFHKLRHPAAMGAPEVEAFLTHLAACEQVSASTQNQALAALLFLY
QEVLAIPLGDVHALRAKKSTYVQPYLSHDECLRILAELDGTPYLVACLLYGSGLRLLEALRLRIQDLDVENSLITVRNTK
SNRDRVTFLPDEERFLQRLRAHLEGVRRLYEVHLDVPVSMPPALARKYPGAATSWEWQYVFPSRDLSVDPRTLVVKRHHL
HPSGVQKAITAAVHAAGMTKRATAHTLRAAFAHRLKEAGYQLDDIQQLMGHADIRTTQHYLEGQAPACKRLRGPLSSRT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 2e-55 44
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 1e-55 44
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 1e-55 44
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 4e-55 43
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 6e-55 43
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 4e-55 43
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 6e-55 43
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 4e-55 43
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 4e-55 43
intI1 AAK02045.1 integrase Not tested SGI1 Protein 6e-55 43
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 3e-55 43
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 4e-55 43
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 6e-55 43
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 4e-55 43
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 6e-55 43
intI YP_001844881.1 integrase Not tested AbaR20 Protein 5e-55 43
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 4e-55 43
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 6e-55 43
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 5e-55 43
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 4e-55 43
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 6e-55 43
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 5e-55 43
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 4e-55 43
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 6e-55 43
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 5e-55 43
int1 YP_005160012.1 integrase Not tested Not named Protein 8e-43 42
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 5e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RoseRS_0840 YP_001275204.1 integron integrase VFG1028 Protein 2e-55 43