Gene Information

Name : RoseRS_3069 (RoseRS_3069)
Accession : YP_001277382.1
Strain : Roseiflexus sp. RS-1
Genome accession: NC_009523
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3856558 - 3857346 bp
Length : 789 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAAAACGGGGCAACCTGCGATCCAGGTGACCGATCTAACGGTTGCGTATCGTGATAAGCCGGTGCTGTGGGATGTTGA
TCTGACGATCCCTGGCGGCGTGCTGATGGGGATCATTGGACCGAACGGTGCTGGCAAAACGACGTTGATGAAAGCGATTC
TGGGTCTGGTGCGACCTTCCGCCGGGCAGGTGTTGGTCTATGGCAGGCCGTATGCCCAACAGCGCAGGCTGGTTGCGTAT
GTGCCACAGCGGAGCAGCGTGGACTGGGATTTTCCGACCAGTGTGCTCGACGTGGTGGTGATGGGGCGGTATGGTGCGCT
GGGTTGGTTTCGGCGTCCAGGGAAGCGTGAGCGTGAACAGGCGCTCGAAGCGCTGGCGCGTGTCGGTATGCAGGATTTTG
CCAGTCGCCAGATCGGTCAGCTTTCCGGCGGGCAGCAACAGCGTGTCTTTCTGGCGCGTGCGCTGGTGCAGGATGCGCAG
GTGTATCTCATGGACGAACCGCTGCAGGGTGTTGATGCCACCACTGAGCGAACCATTATTCATATTCTGCACGACTTGCG
CGCGACCGGTAAAACGGTTGTGGTTGTGCACCACGACCTTCAAACGGTCAGTGAGTATTTTGACCAGGTTGCGCTGTTGA
ATGTACGTCTCGTCGCCAGTGGTCCGGTGGCAGAGGTATTCAACGCAGCGACGCTGCGCGCCACGTATGGCGGACAGATC
GCATTTCTCGAGGGACGCGATCCTGGACGTTCTGCGCCTGAACCGCACGCTGGAATTACTGTATCGTAG

Protein sequence : 
MKTGQPAIQVTDLTVAYRDKPVLWDVDLTIPGGVLMGIIGPNGAGKTTLMKAILGLVRPSAGQVLVYGRPYAQQRRLVAY
VPQRSSVDWDFPTSVLDVVVMGRYGALGWFRRPGKREREQALEALARVGMQDFASRQIGQLSGGQQQRVFLARALVQDAQ
VYLMDEPLQGVDATTERTIIHILHDLRATGKTVVVVHHDLQTVSEYFDQVALLNVRLVASGPVAEVFNAATLRATYGGQI
AFLEGRDPGRSAPEPHAGITVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-52 46
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-52 46
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-52 46
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-52 46
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-52 46
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 1e-47 44
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 2e-47 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RoseRS_3069 YP_001277382.1 ABC transporter-like protein BAC0400 Protein 1e-76 61
RoseRS_3069 YP_001277382.1 ABC transporter-like protein BAC0350 Protein 1e-52 46
RoseRS_3069 YP_001277382.1 ABC transporter-like protein BAC0440 Protein 2e-49 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RoseRS_3069 YP_001277382.1 ABC transporter-like protein VFG0526 Protein 1e-52 46