Gene Information

Name : RoseRS_0268 (RoseRS_0268)
Accession : YP_001274653.1
Strain : Roseiflexus sp. RS-1
Genome accession: NC_009523
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 339193 - 340026 bp
Length : 834 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence :
GTGAATACTGAAACTGAGTACATAACGCCGGTCGAAGTGATTGACTACGTGACCGAACCGGTGGTACGGGTTGAACATGT
GACGAAGGAGTTCGTCACCGGCGGCAGTCGCTTCCGCGCTCTCGATGACGTGTCGCTCGAAATCCATCGCGGCGAAATGG
TCGCTATTATGGGACCGTCCGGGAGTGGCAAGAGCACCCTGATGACGATCCTGGGGCTGCTCGATGTGCCAACGTCCGGT
TCCTACTGGCTCGACGGGCAGGATGTCAGCAAACTGGACCGAGTGCAGCAGGCGCGGGTGCGCAATCAGAAACTGGGGTT
CGTGTTCCAGAACTTCAACCTGTTGCCACGGCTTACGGCGTTGAAGAACGTAGAACTGCCGCTGGTCTACGGGCGTGTCG
GTGCGCGTGAGCGCGAAGAGCGCGCGCGTCGGGCGCTGGAAGCGGTTGGTTTAGAGACGAAACTCCACAACCGTCCAAAC
GAGTTGTCGGGCGGACAGAAGCAGCGTGTCGCCATCGCCCGTGCGCTGGTGGGCAACCCGGCGATGGTGCTTGCCGACGA
ACCGACCGGCGCGCTCGACACCCGCACCGGCGCAGAGATTATGGCGCTCTTCCGCGAGTTGAACCGCGAGCAGGGCATTA
CGATTGTGATCGTGACGCACGATCCGGAAATTGGCAAACAGATGGACCGGGTGATCGGGCTGCGCGACGGACGGATTGCC
GACAATATCTTGCAGGAGTACTACCACGTCAATCTCGCGCCAGAGGAACTCGAACTGCCGGTGCGCGAGATGGCGCCGGT
GCCGGTGACGGTTCTCAAACCAGAACAGGAGTAG

Protein sequence :
MNTETEYITPVEVIDYVTEPVVRVEHVTKEFVTGGSRFRALDDVSLEIHRGEMVAIMGPSGSGKSTLMTILGLLDVPTSG
SYWLDGQDVSKLDRVQQARVRNQKLGFVFQNFNLLPRLTALKNVELPLVYGRVGAREREERARRALEAVGLETKLHNRPN
ELSGGQKQRVAIARALVGNPAMVLADEPTGALDTRTGAEIMALFRELNREQGITIVIVTHDPEIGKQMDRVIGLRDGRIA
DNILQEYYHVNLAPEELELPVREMAPVPVTVLKPEQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-30 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-23 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RoseRS_0268 YP_001274653.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-50 54
RoseRS_0268 YP_001274653.1 ABC transporter-like protein NC_008702.1.4606598. Protein 3e-39 53
RoseRS_0268 YP_001274653.1 ABC transporter-like protein NC_012469.1.7686946. Protein 6e-26 42
RoseRS_0268 YP_001274653.1 ABC transporter-like protein CP001581.1.gene598.p Protein 1e-33 41
RoseRS_0268 YP_001274653.1 ABC transporter-like protein CP001581.1.gene798.p Protein 4e-33 41