Gene Information

Name : RoseRS_0188 (RoseRS_0188)
Accession : YP_001274574.1
Strain : Roseiflexus sp. RS-1
Genome accession: NC_009523
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 234812 - 235549 bp
Length : 738 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein

DNA sequence :
ATGACGACAATACTCCTGGTCGAAGACGATAGCGTTCTTCTCGAGACGCTTTCGTACAATTTTGAGCGGGCAGGGTTTCA
GGTCGCAACCGCCTCGGATGGTTTGACCGGGCTGGAAATGGCGCGTCGGACGCATCCCGATCTGATCATCCTGGATGTGA
TGCTGCCGGGACTGGATGGTTTTTCCGTCTGTCGCGCAGTGGCGAAAGAAACAACCGTTCCGATTGTTCTGCTGACGGCG
CTGCACGACGAGGCGCACCGGATCGCCGGGCTGGAACTCGGCGCAATCGATTACGTGGTCAAGCCGTTCAGTATGGGTGA
GTTGCTGGCGCGTGTACGCGCCATCCTGCGCTGGAATGAACGCCAGCGCCAAACCCCATCCTCGAATGTGCTATGCGTTG
GTCCGGTGCAACTGGATCGCAACAGCCGACGCGTCTGGTACAAGGACCGCGAGATCGAACTCTCGCACAAAGAGTTCGAT
CTGCTCGCGTGCCTGATGCACAACGCCGGTGTCGCGCTTTCGCGCGACCTGTTGCTGGAGCGTGTCTGGGGCAGCGATTT
TCTCGGTTCGAACCGGACAATCGATGTTCACGTGCGCTGGCTGCGCGAAAAACTGGAGCCTGATCCCGCCAATCCAACGC
TGATCCGCACCGTGCGCGGCATCGGGTACTGCTTTCAGGACCCGGCAACAGACCCGCCAGGGCGTCGCATGCTGGAGGAG
TCGGAGCCAGCATCCTGA

Protein sequence :
MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSVCRAVAKETTVPIVLLTA
LHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFD
LLACLMHNAGVALSRDLLLERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPATDPPGRRMLEE
SEPAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-31 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RoseRS_0188 YP_001274574.1 two component transcriptional regulator NC_009641.5332272.p0 Protein 1e-44 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator NC_013450.8614421.p0 Protein 1e-44 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator NC_007793.3914279.p0 Protein 1e-44 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator NC_003923.1003749.p0 Protein 1e-44 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator NC_002745.1124361.p0 Protein 1e-44 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator NC_009782.5559369.p0 Protein 1e-44 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator BAC0125 Protein 1e-36 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator NC_002951.3237708.p0 Protein 1e-44 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator NC_007622.3794472.p0 Protein 1e-44 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator NC_002758.1121668.p0 Protein 1e-44 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator NC_002952.2859905.p0 Protein 1e-44 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator AE000516.2.gene3505. Protein 2e-36 44
RoseRS_0188 YP_001274574.1 two component transcriptional regulator AE016830.1.gene1681. Protein 2e-48 43
RoseRS_0188 YP_001274574.1 two component transcriptional regulator BAC0347 Protein 2e-33 42
RoseRS_0188 YP_001274574.1 two component transcriptional regulator HE999704.1.gene2815. Protein 1e-41 42
RoseRS_0188 YP_001274574.1 two component transcriptional regulator BAC0197 Protein 5e-33 41
RoseRS_0188 YP_001274574.1 two component transcriptional regulator BAC0111 Protein 3e-35 41
RoseRS_0188 YP_001274574.1 two component transcriptional regulator BAC0083 Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RoseRS_0188 YP_001274574.1 two component transcriptional regulator VFG1389 Protein 2e-36 45
RoseRS_0188 YP_001274574.1 two component transcriptional regulator VFG0596 Protein 4e-31 42
RoseRS_0188 YP_001274574.1 two component transcriptional regulator VFG1390 Protein 2e-36 41