Gene Information

Name : RoseRS_1257 (RoseRS_1257)
Accession : YP_001275612.1
Strain : Roseiflexus sp. RS-1
Genome accession: NC_009523
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1544234 - 1545049 bp
Length : 816 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAACACGCCACATATCGAACAGGAACCAGCCCATCTTGAGATCGAGCGCCTGACCGTCGCCTATGGGCGGCGGCGGGT
GCTCGATGATATTTCGTTTCGTGTGGAATACGGCGAACGAGTGGTGCTGGTGGGACCAAACGGCGCTGGCAAGTCGACTC
TGTTCAAGGCGCTGGTCGGTCTGGTGAAGCCACAGAGCGGCACGATCCGCATTCACGGACTGCCGCCTGGTGCGCATACC
GACTGTGTAGCCTACGTGCCGCAGCGTGAGGATGTCGACTGGCGCTTTCCGGTGACTGTCGCCGATGTGGTGATGATGGG
ACGGTTTGGACGGCTCGGCTGGTTGAGACGCCCAACGCGCGCCGACCACGCGGCTGTTGAACGTGGGATGGAGTTGATGG
GTGTGGCTCACCTGGCGCGTCGTCCTATCGGAGAATTGTCCGGCGGTCAGCAGCAGCGTGTCTTTCTGGCGCGCGCGCTG
GCGCAGGAGCCGCACATCCTCCTGCTCGATGAACCGTTCACCGGCGTCGATGCAGCAACCCAGGAAGCAACCCTCAGTGT
GCTCGACGCCCTCAGCGATCAAAAGGTGACGATTATCCTCTCCACGCACGACCTTGGTCTTGCAGCGGCGCGCTTTGAGC
GCGTGTTGCTGATCAACCGGCGCCTGATCGGTGATGGACCTCCAGTCCGGGTCTTGAGTCGCGGTCCGCTGGCTGAGGCG
TTTGGCGGACAGGTGTTGACACTGCCCGATGGCTCGGTGCTGGTCGATCAGTGCGCCTGTCATCAATCTGAACCAGAAAG
CATTGTGGTGAAATGA

Protein sequence : 
MNTPHIEQEPAHLEIERLTVAYGRRRVLDDISFRVEYGERVVLVGPNGAGKSTLFKALVGLVKPQSGTIRIHGLPPGAHT
DCVAYVPQREDVDWRFPVTVADVVMMGRFGRLGWLRRPTRADHAAVERGMELMGVAHLARRPIGELSGGQQQRVFLARAL
AQEPHILLLDEPFTGVDAATQEATLSVLDALSDQKVTIILSTHDLGLAAARFERVLLINRRLIGDGPPVRVLSRGPLAEA
FGGQVLTLPDGSVLVDQCACHQSEPESIVVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 4e-45 45
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 4e-45 45
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 7e-46 45
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-46 45
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 5e-46 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RoseRS_1257 YP_001275612.1 ABC transporter-like protein BAC0440 Protein 1e-48 47
RoseRS_1257 YP_001275612.1 ABC transporter-like protein BAC0400 Protein 2e-46 45
RoseRS_1257 YP_001275612.1 ABC transporter-like protein BAC0350 Protein 3e-46 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RoseRS_1257 YP_001275612.1 ABC transporter-like protein VFG0526 Protein 3e-46 45