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Name : Lreu_0350 (Lreu_0350) Accession : YP_001270956.1 Strain : Lactobacillus reuteri DSM 20016 Genome accession: NC_009513 Putative virulence/resistance : Unknown Product : transposase, IS4 family protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3666 EC number : - Position : 396620 - 398230 bp Length : 1611 bp Strand : - Note : PFAM: transposase, IS4 family protein DNA sequence : ATGTATCAAAATTATACCATAGGGCAAACCGAATTCGTACTAAACTATAACTATGATTTACCACAGAATCATGTTGCGCG ACTAATTAGTGATTTTGTCGACTCGATTCCACAAGATGTGCTATTAGAAGATTCAGGAGCGGCTACCGGCCGCCCTTTAT CGCATCCAGCAATTATGCTTAAGATTCTCTTGTTTGCCTACTCACGTCAAACTTATTCTGGAAGAAAGATTGAAATGATG TTGGATGAGAACCTGCCAATGCGTTGGTTAGCCCATGATTATACTTATAGCTACCATACCATCAATAACTTTCGCCGCAG TCAGCACGCTAGTAAGCTAATTAAACATGCCTTTGTCTACTTTACCATGACTTTGAAAGATCACGGACTAATTCAAAATG ATGCAGTTTTTATCGATGGGACCAAGGTAGAAGCCGATGCCAATAAATATTCATTTACTTGGCGGCGGGCAGTTGAAAAG TATCACGCTAAGTTAAGAGAAAAGACAAGTAAGCTTTATGAGGAACTAGTAGAAAAGCAAGTGGTACAGGAAATGGCACC GGAGCTGGTTACTTCCGCCGAAGGCATGGAAGTAATGGAACAAGAACTGGCGGAGAAAATCACTAAATTAGATGAAAAGA TTAAGCAAGAACCAAAAATCATCAAAGGGGGTTCAGTTAGAAAACGGCGCCGTCGTTTTCTAAAAAAGCTTCGTCACCAA TTAAGCAACGACCTAATTCCGCGTGCCCAAAAGTATGAACGTGCTGAAAATATCTTCCAAGGTCGTAATAGCTATTCCAA AACTGACCACGATGCGACCTTTATGTGTATGAAGGAAGATCCGATGATGAATCGGGAGTTGAAGCCTGGCTATAACCTGC AAATCGCTACCCATAAGCAATTTGTGCTTGATTACGGGCTGTTTTCAAATCCAACTGACACCAGGACCTTAGTGCCATTC CTTACCCAGTTTCATGCTTTAGATTTCTTTGAACATATCGTCGCCGATGCAGGCTATGGAAGTGAGTACAATTACACAAT GATTCTTGATCGGTTTGAAAAGCAGCCGGTTATCCCATACACAACCTATCAAAAGGAACAGAAACGTAAATTTAAAAACG ATCCAACTAGGTCACAGAATTGGGAATATAACGCTAATGACGACTACTACATTGATCATCAAGGAGTTCGTTTTAGTTTT TATCGCTATAGTAAATCCACTGATAAGTATGGCTTTAAGCGTGACTTTAAAATCTATCGTGCTGATAAACATCAACTATC AGTTAAATTAGATGAACTAGCGAAGACACCAGGTGGTCGTCAACGTTATATGAAGGTTAACCCAACCTGGAATTATTATA AAGCTAAAGTTAAAGATGCCCTCTCAAGTGACGAAGGCAAGGCAATTTATCGTCGACGGAAGTTCGACGTTGAGCCAGTC TTTGGTCACATGAAGAGGGATTTTGGCATACGCCGAACTCATCTCCGTGGCCAACGGGCTGTGGAAAATGACATTGGGCT AGCCCTGATGGCATTAAATCTAACGAAATTTGGCCAATCAATTAGTCGATTGGAGACTAATTTCATAAATAATTTAAAAT CCGGACTATGA Protein sequence : MYQNYTIGQTEFVLNYNYDLPQNHVARLISDFVDSIPQDVLLEDSGAATGRPLSHPAIMLKILLFAYSRQTYSGRKIEMM LDENLPMRWLAHDYTYSYHTINNFRRSQHASKLIKHAFVYFTMTLKDHGLIQNDAVFIDGTKVEADANKYSFTWRRAVEK YHAKLREKTSKLYEELVEKQVVQEMAPELVTSAEGMEVMEQELAEKITKLDEKIKQEPKIIKGGSVRKRRRRFLKKLRHQ LSNDLIPRAQKYERAENIFQGRNSYSKTDHDATFMCMKEDPMMNRELKPGYNLQIATHKQFVLDYGLFSNPTDTRTLVPF LTQFHALDFFEHIVADAGYGSEYNYTMILDRFEKQPVIPYTTYQKEQKRKFKNDPTRSQNWEYNANDDYYIDHQGVRFSF YRYSKSTDKYGFKRDFKIYRADKHQLSVKLDELAKTPGGRQRYMKVNPTWNYYKAKVKDALSSDEGKAIYRRRKFDVEPV FGHMKRDFGIRRTHLRGQRAVENDIGLALMALNLTKFGQSISRLETNFINNLKSGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAUSA300_0034 | YP_492755.1 | IS1272, transposase | Not tested | Type-IV SCCmec | Protein | 5e-83 | 42 |
| SACOL0036 | YP_184947.1 | IS1272 transposase | Not tested | Type-I SCCmec | Protein | 5e-85 | 42 |
| SAMSHR1132_00350 | YP_005324559.1 | putative transposase | Not tested | Type-IIIinv SCCmec | Protein | 5e-85 | 42 |
| MW0034 | NP_644849.1 | hypothetical protein | Not tested | Type-IV SCCmec | Protein | 5e-85 | 42 |
| unnamed | BAA86649.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 4e-85 | 42 |
| tnp | YP_254534.1 | IS1272 transposase | Not tested | ¥ðSh2 | Protein | 7e-75 | 41 |
