|
Name : Lreu_0190 (Lreu_0190) Accession : YP_001270797.1 Strain : Lactobacillus reuteri DSM 20016 Genome accession: NC_009513 Putative virulence/resistance : Unknown Product : succinyl-diaminopimelate desuccinylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0624 EC number : 3.5.1.16 Position : 222868 - 224013 bp Length : 1146 bp Strand : - Note : dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is simi DNA sequence : ATGGAAGTCAGTGAAAAAGTCAAAGTACTGCAAGATTTAATAAAAATCCATTCTGTCAATGGAAATGAAGTTGAAGTAGC CCACTACTTACAAAAACTTTTATCAAGTCACGGAATTGATTCAAAAGTTGATGAATTTGGTGACCGCCGTGCAAATTTGA TCGCGGAAATCGGAACTGGTGAAAGCAAAAAAATTCTTGGACTTACTGGGCACCAAGACACTGTGGCAGTACCTAATCCA GATCGCTGGCAACATGATCCCTTTGGCGGTGAAATTAACGGTGATTATGTTTTCGGTCGGGGAGCCGCTGACATGAAAAG CGGTCTGGCTGCTCAAGCCATCGTCTTAATCGAATTAAAAGAAGCTGGTCAACTGCCATCAGGAACGGTTAGATTTATTG CTACCGCCGGAGAAGAACTTGGTACTCCTGGTGCCTATCGATTACAAAAACAAGGAGTTGCCGATGATCTTGATGCATTA GTAGTCGGTGAACCAACTGGCGGAAACGTTATTTTTGCTCACTCAGGAAGTATGAACTATCGTGTTACTAGCTATGGAAA GTCTTGTCATAGTTCACATCCGCAAAACGGTATTAATGCAATTGAAGGGTTGCTAAAGTTTATCGAAGAAGAAAAACACC TTTTTGATAATAGCAAGGATGATCAGTATCTCGGTAAAGTGCAGCATAGTATTACAGTTATTGATGGCGGGTCACAAGTT AATACCATCCCCGACAGCGCTAGTTTACATGGCAACATTCGTCCCACGGCAGCATTTAATAATATTAAAGTTGCAGATCG ATTAAACGATGCGCTTGAATACATTAATCACACAACTCCCTTCCAATTAGAACTAAAAATTATTCAAGATTTCTATCCCA TTGCAACAGAACCTAATAATGATTTTGTCCAAATCGCCCTCAATGCTGCTCAGCGCAATTATCCAAATGATATCAAACTC GATATTATCAATGGTGCAACAGATGCGAGTGTATTTACATTAAATCGGCCAGATCTTCCGGTTGTAATTTTAGGTTGTGA TGATTGGAATGCGGCTCATCAAAATGATGAATATACAACTATTTCCAGTTACGTCGCTACAATTAAAGCTTATAAGCAAA TTATTCGTGATTTCTTCAAAGAATAA Protein sequence : MEVSEKVKVLQDLIKIHSVNGNEVEVAHYLQKLLSSHGIDSKVDEFGDRRANLIAEIGTGESKKILGLTGHQDTVAVPNP DRWQHDPFGGEINGDYVFGRGAADMKSGLAAQAIVLIELKEAGQLPSGTVRFIATAGEELGTPGAYRLQKQGVADDLDAL VVGEPTGGNVIFAHSGSMNYRVTSYGKSCHSSHPQNGINAIEGLLKFIEEEKHLFDNSKDDQYLGKVQHSITVIDGGSQV NTIPDSASLHGNIRPTAAFNNIKVADRLNDALEYINHTTPFQLELKIIQDFYPIATEPNNDFVQIALNAAQRNYPNDIKL DIINGATDASVFTLNRPDLPVVILGCDDWNAAHQNDEYTTISSYVATIKAYKQIIRDFFKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dapE | CAA07459.1 | succinyl-diaminopimelate desuccinylase | Not tested | Internalin | Protein | 7e-66 | 42 |
| unnamed | CAC20637.1 | - | Not tested | Internalin | Protein | 3e-66 | 42 |
