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Name : Pput_5097 (Pput_5097) Accession : YP_001270399.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 5728291 - 5729964 bp Length : 1674 bp Strand : + Note : PFAM: type II secretion system protein E; General secretory system II, protein E domain protein DNA sequence : ATGCACACCCCCGACAACCTGGCACTCGACCTCAAGCGCGTGCTCCAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAG CGATACCCTGCAAGTACTCGAACACGCCGCCGCCCACCCCGGTAGCCACCCGCTGGAACACATCGCCGCCAGCAGCCTGG AAAGCCGCCAGCACCCTGGCCAGCCTCTGGACCTGGAATACCTTTGCCAATGGCTGGCCGACAAGGTCGGCCAACCCTAC CTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCGGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCAT CCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAGCGCCCAGCCTTTCCAGGATGACTGGCAGGCCGACCTGG CCCGCAGCCTCGGCCGATCGATCCGTCGCGTACTGGCCAGCCCGCAGCAGATCCGTGAGTCAGCGCAGTCGTTCCACCGC CTGGCCCAGTCGGTAAAAGGCGCGCAATACCAGCAGTCGGCCAGCCTGGGGGAACTTGAGCAATTGCTGGAGCTGGGCAA ACGCCAGGCCGAGGCCAGCGCAGACGACGCACACATTGTGCATATCGTCGACTGGCTGCTGCAGTACGCCATTGAGCAAC GCGCCAGCGATATCCACTTGGAACCGCGCCGCGAACAGGGCCAGCTGCGCTACCGCATCGATGGCCTGCTGCACACCGTC TATGCCTTCCCCGCCGGTGTCACCCTGGCCCTCGTCAGCCGCCTGAAACACCTGGGCCGCATGGACGTTGCCGAGAAACG CCGGCCGCAGGACGGCCGGTTGCAAAGCCGCCTGCCCGGTGGTGGCGAAGTGGAGCTGCGGCTTTCGACCCTGCCCACCC CGTTTGGCGAGAAACTGGTGCTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGC CAGCAACTGGCCCAATGGCAGCGCCTGCTACGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAA AACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACCCCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGC GCCTGGAGCCTGCCTTCAACCAGCTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCTATGCTG CGCCAAGATCCCGACATCATCATGATCGGCGAAATTCGCGACCGCGAAACCGCCCTGGTGGCAGTTCAGGCAGCGCTGAC CGGGCACCTGGTACTGTCCACCCTGCATACCAACGACGCTTGTGCAGCAATTACCCGCTTGCAAGAGCTGGGTGTGGCCG ACTACCTCATCAAGGCGACGCTTATCGGGGTGATGGCCCAGCGCCTGGTGCGAACCGTCTGCACCGACTGCCAGGCAGGT TCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACAGGATTATTCGAACTGCTCGAGCCCAGCGA CACCTTGCGCGCATTGATCGGCCCTCATGCCGACCTGACCCGATTGCGGCAACAGGCACTGGCCGATGGCCTGGTTGACC TGCGCCATTGCGGCGAGGCCAAAGTGGCCGCTGGGCAGACCCGTGCCGAGGAAGTGCTGCGCGTCTGCAACTGA Protein sequence : MHTPDNLALDLKRVLQALLADQHLHASDTLQVLEHAAAHPGSHPLEHIAASSLESRQHPGQPLDLEYLCQWLADKVGQPY LRIDPMQLDLPQVTGLISPAFAQRHGILIVAADASSVTVASAQPFQDDWQADLARSLGRSIRRVLASPQQIRESAQSFHR LAQSVKGAQYQQSASLGELEQLLELGKRQAEASADDAHIVHIVDWLLQYAIEQRASDIHLEPRREQGQLRYRIDGLLHTV YAFPAGVTLALVSRLKHLGRMDVAEKRRPQDGRLQSRLPGGGEVELRLSTLPTPFGEKLVLRLFDPHQLQEGFDRLGLHG QQLAQWQRLLRQRQGIILVTGPTGSGKTSTLYTSLKLLATPQVNLCTIEDPIERLEPAFNQLQVQPALDLGFANAVRAML RQDPDIIMIGEIRDRETALVAVQAALTGHLVLSTLHTNDACAAITRLQELGVADYLIKATLIGVMAQRLVRTVCTDCQAG SSATCRACRGTGFQGRTGLFELLEPSDTLRALIGPHADLTRLRQQALADGLVDLRHCGEAKVAAGQTRAEEVLRVCN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-58 | 47 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-59 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pput_5097 | YP_001270399.1 | type II secretion system protein E | VFG2048 | Protein | 1e-58 | 47 |
