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Name : Pput_5073 (Pput_5073) Accession : YP_001270375.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Virulence Product : sigma-54 factor interaction domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 5700595 - 5701425 bp Length : 831 bp Strand : - Note : PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase DNA sequence : ATGACGTTTCAAAACCCGTTCGGCCAGCCGCTACTGACCTTCCCCGAGCTGGACAAGAGCCCGCTGAGCATTCGTGCCAA GGCGCTGGTGTTCATCGACCCGCGCTCGCAGCAGCTGCGCGAGGACCTTGAGCGCCTTGCGCTACAACCTTTGCCAGTGC TGATCCGTGGCGAAACCGGCACCGGCAAGGAGCTGCTGGCCCGGCAGATTCACCGTACCAGCGACCGTGGAGGGTTGTTC GTGTCGGTCAACTGCGCGGCCATCAGCCCCACCTACGCCGATGCCGAGCTGTTTGGCTATAGCGCGGGCACCCATGGCGG TACGGCCAGCAGCCGCGCCGGCTGGTTCGGTTCGGCCAGCGGCGGCACCTTGTACCTGGACGAGATTGCCGACTTGCCGT TGGCCATCCAGGGCAAGCTGCTGGCGGCCCTGGAAAACCGCGAGGTCACTCGGGTGGGCGCGCAGCAGCCACAGCCGGTG GATGTGCGCCTGGTAGCCGCCACCAGCATCGACCTGGCCCGTGTAGTACGTGCAGGGCGCTTCAACGAGCGCCTGTACCA GTATCTGCGCGAGGGCGCGCTGGAGCTGCCGCCGCTGCGCGAGCGGCCGGGCGATATCCTGCCGCTGGCCGAGTACTTCG TGGGCATCTACAGCGTGCGCCTGCAACGGCCACTGCCCTTGGTGAGCGAGGCGGCGCAGCGGGTGCTGGAGGCGCATTTC TGGCCGGGCAATACCCGCGAACTGGAGAACGTCATCCACTTTGCCTTGCTGGTCAATGACGGCGAAGAGATCCTGCCAGA AGACCTCGAACTGCCTGACCCCTCGCGTTAG Protein sequence : MTFQNPFGQPLLTFPELDKSPLSIRAKALVFIDPRSQQLREDLERLALQPLPVLIRGETGTGKELLARQIHRTSDRGGLF VSVNCAAISPTYADAELFGYSAGTHGGTASSRAGWFGSASGGTLYLDEIADLPLAIQGKLLAALENREVTRVGAQQPQPV DVRLVAATSIDLARVVRAGRFNERLYQYLREGALELPPLRERPGDILPLAEYFVGIYSVRLQRPLPLVSEAAQRVLEAHF WPGNTRELENVIHFALLVNDGEEILPEDLELPDPSR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 7e-38 | 45 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 7e-38 | 45 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 1e-34 | 43 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 2e-34 | 43 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 7e-35 | 43 |
