Gene Information

Name : Pput_5013 (Pput_5013)
Accession : YP_001270317.1
Strain : Pseudomonas putida F1
Genome accession: NC_009512
Putative virulence/resistance : Resistance
Product : MerR family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG0789
EC number : -
Position : 5637096 - 5637539 bp
Length : 444 bp
Strand : +
Note : TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding

DNA sequence : 
ATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCC
AGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCC
GCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTC
AATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAAGAGCAGCTGGTGGA
GCTGCGGCGGCGCTGCAACACGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTGC
CGGATACCGAACATTCGCATGTGGGGCGGAGTCACGGGCATTGA

Protein sequence : 
MKIGELAKATDCAVETIRYYERENLLPEPARSEGNYRLYTQAHVERLTFIRNCRTLDMTLDEIRSLLRLRDSPDDACGSV
NALIDEHIEHVQARIDGLVALQEQLVELRRRCNTQGSECAILQQLETNGAVSVPDTEHSHVGRSHGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C98 AAN62191.1 putative transcriptional regulator Not tested PAGI-2(C) Protein 2e-36 56
ACICU_00234 YP_001844893.1 transcriptional regulator Not tested AbaR20 Protein 4e-32 49
cadR ACS32041.1 MerR family transcriptional regulator Not tested AbaR5 Protein 3e-32 49
cadR ADZ05769.1 MerR family transcriptional regulator Not tested AbaR11 Protein 2e-32 49
cadR ACN81029.1 MerR family transcriptional regulator Not tested AbaR5 Protein 3e-32 49
pbrR CAJ77094.1 Transcriptional regulator Not tested AbaR1 Protein 2e-32 49
cadR AGK36653.1 MerR family transcriptional regulator Not tested AbaR26 Protein 2e-32 49
pbrR CAJ77021.1 transcription regulator Not tested AbaR1 Protein 2e-32 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pput_5013 YP_001270317.1 MerR family transcriptional regulator BAC0058 Protein 3e-64 96
Pput_5013 YP_001270317.1 MerR family transcriptional regulator BAC0301 Protein 1e-34 58
Pput_5013 YP_001270317.1 MerR family transcriptional regulator BAC0682 Protein 7e-20 41