|
Name : Pput_4605 (Pput_4605) Accession : YP_001269909.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Unknown Product : phage integrase family protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 5154871 - 5156127 bp Length : 1257 bp Strand : + Note : PFAM: phage integrase family protein DNA sequence : ATGTGCGCTCAAACAGCTCGTCTCTCCGACCGCCAACTCAAGGCGGTCAAGCCCAAAGACAAGGACTATGTCCTCACGGA TGGCGACGGCCTCCAGCTCCGAGTCCGGGTAAACCGCTCGATGCAGTGGAATTTCAACTACAGGCATCCGGTCACCAAGA ATCGAATCAACATGGCGCTCGGCTCCTATCCCGAGGTCTCTCTGGCGCAAGCTCGGCGAAAAGCGGTTGAAGCTAGGGAA GTACTTGCCCAGGGGATCGACCCCAAAGCTCAGCGCAATGATCTCGCGCAGGCCAAACTAGCCGAGACAGAACATACGTT CGAGAAAGTAGCTAGCGCCTGGTTCGAGTTGAAAAAGGACTCGGTCACGCCGGCCTATGCTGAGGACATCTGGCGCTCAC TCACGCTGCACGTTTTTCCGAGCATGAAATCGACTCCAATCTCGGAAGTCAGTGCACCGATGGTGATCAAGATCCTTCGC CCTATCGAATCCAAAGGCAGCTTGGAAACGGTGAAGCGGCTTAGCCAGCGCCTCAACGAGATCATGACCTACGGGGTCAA TTCAGGAATGATCTTCGCGAACCCGCTCAGCGGGATTCGGGCGGTGTTCAAGAAACCGAAGAAAGAAAATATGGCGGCGC TACCGCCCGAGGAGCTTCCTGAGCTCATGCTGGAAATAGCGAACGCCAGTATCAAGCGCACGACACGCTGCCTGATCGAG TGGCAGTTGCACACGATGACCCGCCCCGCCGAGGCGGCAACTACTCGCTGGGTAGACATCGACTTTGAAAGGCGAGTCTG GACCATCCCACCGGAGCGGATGAAGAAGAGCCGCCCGCACAGCATCCCGTTGAGCGATCAAGCCATGTCATTGCTGGAGA TACTGAAGTCCCACAGTGGTCATCGGGAATACGTCTTCCCTGCAGACCGAAACCCTCGTACTCATGCCAATAGCCAGACC GCCAACATGGCATTGAAACGCATGGGCTTCCAGGACCGCCTGGTCAGCCACGGCATGCGCTCGATGGCCAGCACCATCTT GAATGAACATGGGTGGGACCCGGAGCTCATCGAAGTGGCGTTGGCACACGTCGACAAGGATGAGGTGCGCAGTGCCTACA ACCGAGCCGACTACATCGAGCGACGGCGGCCGATGATGGCTTGGTGGAGCGAGTACATTCTGAAGGCGTCGACGGGCAAT CTCTCGGCCAGCGCGATGAATGTGGCTAGGGATCGAAACGTAGTACCCATCCGATAG Protein sequence : MCAQTARLSDRQLKAVKPKDKDYVLTDGDGLQLRVRVNRSMQWNFNYRHPVTKNRINMALGSYPEVSLAQARRKAVEARE VLAQGIDPKAQRNDLAQAKLAETEHTFEKVASAWFELKKDSVTPAYAEDIWRSLTLHVFPSMKSTPISEVSAPMVIKILR PIESKGSLETVKRLSQRLNEIMTYGVNSGMIFANPLSGIRAVFKKPKKENMAALPPEELPELMLEIANASIKRTTRCLIE WQLHTMTRPAEAATTRWVDIDFERRVWTIPPERMKKSRPHSIPLSDQAMSLLEILKSHSGHREYVFPADRNPRTHANSQT ANMALKRMGFQDRLVSHGMRSMASTILNEHGWDPELIEVALAHVDKDEVRSAYNRADYIERRRPMMAWWSEYILKASTGN LSASAMNVARDRNVVPIR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0847 | NP_230494.1 | phage family integrase | Not tested | VPI-1 | Protein | 1e-123 | 60 |
| VC0395_A0372 | YP_001216328.1 | phage family integrase | Not tested | VPI-1 | Protein | 1e-123 | 60 |
| int | AAK20773.1 | integrase | Not tested | VPI | Protein | 8e-124 | 60 |
| int | AAK20803.1 | integrase | Not tested | VPI | Protein | 8e-124 | 60 |
| unnamed | AAA82714.1 | integrase | Not tested | VPI | Protein | 8e-124 | 60 |
| VC0516 | NP_230167.1 | phage integrase | Not tested | VSP-2 | Protein | 2e-105 | 52 |
| VPI2_0001 | ACA01818.1 | phage family integrase | Not tested | VPI-2 | Protein | 5e-97 | 50 |
| VC1758 | NP_231394.1 | phage family integrase | Not tested | VPI-2 | Protein | 5e-97 | 50 |
| VC0395_A1357 | YP_001217300.1 | phage family integrase | Not tested | VPI-2 | Protein | 5e-97 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pput_4605 | YP_001269909.1 | phage integrase family protein | VFG1092 | Protein | 2e-97 | 50 |
